Dockerfile-base

# Base OS
FROM python:3.9-slim-buster

ARG SIMULATOR_VERSION=2.1.5

LABEL \
    org.opencontainers.image.title="BoolNet" \
    org.opencontainers.image.version="${SIMULATOR_VERSION}" \
    org.opencontainers.image.description="Package for generation, reconstruction, simulation and analysis of synchronous, asynchronous and probabilistic Boolean networks." \
    org.opencontainers.image.url="https://sysbio.uni-ulm.de/?Software:BoolNet" \
    org.opencontainers.image.documentation="https://cran.r-project.org/web/packages/BoolNet/index.html" \
    org.opencontainers.image.source="https://github.com/biosimulators/Biosimulators_BoolNet" \
    org.opencontainers.image.authors="Medical Systems Biology, Ulm University" \
    org.opencontainers.image.vendor="BioSimulators Team" \
    org.opencontainers.image.licenses="Artistic-2.0"

# Install requirements
RUN apt-get update -y \
    && apt-get install -y --no-install-recommends \
        gnupg \
        software-properties-common \
    && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys B8F25A8A73EACF41 \
    && add-apt-repository 'deb http://cloud.r-project.org/bin/linux/debian buster-cran40/' \
    && apt-get update -y \
    && apt-get install -y --no-install-recommends \
        r-base \
        build-essential \
        gcc \
        gfortran \
        libblas-dev \
        libcurl4-openssl-dev \
        libgit2-dev \
        liblapack-dev \
        libssl-dev \
        libxml2 \
        libxml2-dev \
    && Rscript \
        -e "install.packages('devtools')" \
        -e "require(devtools)" \
        -e "install_version('BoolNet', version='${SIMULATOR_VERSION}')" \
        -e "require('BoolNet')" \
    && apt-get remove -y \
        gnupg \
        software-properties-common \
        build-essential \
        gcc \
        gfortran \
        libblas-dev \
        libcurl4-openssl-dev \
        libgit2-dev \
        liblapack-dev \
        libssl-dev \
        libxml2-dev \
    && apt-get autoremove -y \
    && rm -rf /var/lib/apt/lists/*

# fonts for matplotlib
RUN apt-get update -y \
    && apt-get install -y --no-install-recommends libfreetype6 \
    && rm -rf /var/lib/apt/lists/*