Missing dependencies

[andreas-wilm]

Hi there,

Thanks for making PanPep available!

I noticed a couple of missing dependencies and was able to resolve this as follows:

I started with a clean conda environment installing the packages mentioned in the README:

 mamba create -n panpep python==3.9.7 pytorch==1.10.2 pytorch==1.10.2 pandas==1.4.1 scipy==1.7.3

However, the following packages were additionally required:

 mamba install -n panpep joblib matplotlib tensorboardx scikit-learn

You might want to add this to the README.

Best,
Andreas

PS: Do you have any plans to expand this to paired TCRs i.e. CDR3alpha and beta pairs?

[GaoYiChengTJ]

Thank you for your suggestions. In response to your feedback, we have updated our README to include the recommended packages, thereby enhancing the accessibility and usability of PanPep.

We also find your proposal to expand our model to encompass CDR3 alpha and beta pairs worthy of exploration. This direction represents a promising avenue for future research, and we will certainly consider integrating it into our subsequent work.

Once again, we appreciate your interest in our work.