A bug in neo_pyclone_annotation.py

[songofbin]

Some positive pMHC are missing in my pTuneos results. I think that's because of a bug in the 119 line of the neo_pyclone_annotation.py script. People should change it:

from
data_drop=data_fill_na.drop_duplicates(subset=["Gene","MT_pep","WT_pep"])
to
data_drop=data_fill_na.drop_duplicates(subset=["HLA_type","Gene","MT_pep","WT_pep"])

[ChiZhou-SITI]

Yes, if you want to get pMHC pairs from the results, HLA type should also be taken into consideration when drop duplicates.
We will fix it later.
Thank you for your suggestion!