.env.example

# Copy to .env and edit for your environment.
# Compose falls back to production defaults if these are unset, so .env is only
# needed when running outside the production server.

# Host paths bound into the containers.
# INITDB_DIR contains 01_createdb.sql (and any other *.sql run on first start).
# DBFS_DIR holds the wattos1 block-file tree plus entry/mrblock/mrfile CSVs.
# HTML_DIR contains the molgrap image tree.
# RUNTIME_PROPS is the wattos.runtime.properties file the servlet reads.
# NRG_DIR is the exploded NRG webapp (Tomcat serves it directly as /NRG).
# PDB_DIR is the wwPDB structures archive (used by the annotator); point at
# any directory if you don't have a local mirror.

INITDB_DIR=/projects/BMRB/public/wattos/wattos/initdb
DBFS_DIR=/projects/BMRB/public/wattos/dbfs
HTML_DIR=/projects/BMRB/public/wattos/html
RUNTIME_PROPS=/projects/BMRB/public/wattos/wattos/wattos.runtime.properties.uchc
NRG_DIR=/projects/BMRB/public/wattos/wattos/wattos/NRG
PDB_DIR=/projects/BMRB/public/ftp/pub/pdb

# UID:GID the mysql container runs as. Must own the mysql data volume and
# have read access to DBFS_DIR. The default below is the production server's
# service account; for local dev set it to your own (e.g. `id -u`:`id -g`).
MYSQL_USER=17473:10144

# --- Local-dev example (paths are relative to this docker-compose.yml) ---
# INITDB_DIR=./initdb
# DBFS_DIR=../dbfs
# HTML_DIR=../html
# RUNTIME_PROPS=./wattos.runtime.properties.uchc
# NRG_DIR=./wattos/NRG
# PDB_DIR=/tmp/empty-pdb
# MYSQL_USER=1000:1000