-
Notifications
You must be signed in to change notification settings - Fork 0
/
metadata.tsv
We can make this file beautiful and searchable if this error is corrected: It looks like row 6 should actually have 18 columns, instead of 11 in line 5.
executable file
·15 lines (15 loc) · 5.59 KB
/
metadata.tsv
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Sample DropSeq-ID BAM file name ILSE ID Raw Read number (fastQ report) Sum nReads of barcode frequency file Galaxy number of cells (DGE) Sum nReads of barcode frequency file subset DGE Average reads per cell Percentage of reads to keep OLD - Percentage of reads to keep Sum nReds of downsampled cells Average reads downsampled cells (CHECK) Downsampled bam file name 75% Percent of reads to keep 50% Percent of reads to keep 25% Percent of reads to keep
Live human Rep1 27.1 lib2 Galaxy2-[hs_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam 009827 25416611 14360324 40 6990465 174762 14 14 991633 24791 Galaxy2-[hs_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.14.bam Galaxy2-[hs_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.14.bam.75.bam Galaxy2-[hs_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.14.bam.50.bam Galaxy2-[hs_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.14.bam.25.bam
lib3 Galaxy12-[hs_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam 009827 22106836 12563908 40 5598480 139962 18 18 991633 24791 Galaxy12-[hs_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.17.bam Galaxy12-[hs_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.17.bam.75.bam Galaxy12-[hs_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.17.bam.50.bam Galaxy12-[hs_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.17.bam.25.bam
Glyoxal human Rep1 27.7 lib1 Galaxy14-[hs_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam 10491 9828185 5553034 100 2824240 28242 88 88 2479082 24791 Galaxy14-[hs_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.87.bam Galaxy14-[hs_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.87.bam.75.bam Galaxy14-[hs_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.87.bam.50.bam Galaxy14-[hs_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.87.bam.25.bam
lib2 Galaxy4-[hs_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam 10493 10952610 6333450 80 3090267 38628 64 64 1983265 24791 Galaxy4-[hs_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.64.bam Galaxy4-[hs_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.64.bam.75.bam Galaxy4-[hs_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.64.bam.50.bam Galaxy4-[hs_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.64.bam.25.bam
Live human Rep2 34.1 lib1 Galaxy141-[hs_DS34.1.filterbam_step12].bam 100 7025419 70254 35
34.2 lib1 Galaxy9-[hs_DS34.2.filterbam_step12].bam 13628 22320215 11118309 100 5732266 57323 43 43 2479082 24791 Galaxy9-[hs_DS34.2.filterbam_step12].bam.43.bam Galaxy9-[hs_DS34.2.filterbam_step12].bam.43.bam.75.bam Galaxy9-[hs_DS34.2.filterbam_step12].bam.43.bam.50.bam Galaxy9-[hs_DS34.2.filterbam_step12].bam.43.bam.25.bam
Glyoxal human Rep2 34.5 lib1 Galaxy8-[hs_DS34.5.filterbam_step12].bam 13628 18911302 11186862 200 4958163 24791 100 100 4958163 24791 Galaxy8-[hs_DS34.5.filterbam_step12].bam.100.bam Galaxy8-[hs_DS34.5.filterbam_step12].bam.100.bam.75.bam Galaxy8-[hs_DS34.5.filterbam_step12].bam.100.bam.50.bam Galaxy8-[hs_DS34.5.filterbam_step12].bam.100.bam.25.bam
Live drosophila Rep1 27.1 lib2 Galaxy1-[dm_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam 009827 25416611 7148315 100 4515677 45157 28 24 1087519 10875.19 Galaxy1-[dm_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.24.bam Galaxy1-[dm_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.24.bam.75.bam Galaxy1-[dm_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.24.bam.50.bam Galaxy1-[dm_DS27.1_lib2_09827_AS_212222_A2.filterbam_step12].bam.24.bam.25.bam
lib3 Galaxy11-[dm_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam 009827 22106836 6328398 100 3809575 38096 33 29 1087519 10875.19 Galaxy11-[dm_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.28.bam Galaxy11-[dm_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.28.bam.75.bam Galaxy11-[dm_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.28.bam.50.bam Galaxy11-[dm_DS27.1_lib3_09827_AS_212224_A2.filterbam_step12].bam.28.bam.25.bam
Glyoxal drosophila Rep1 27.7 lib1 Galaxy13-[dm_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam 10491 9828185 2124203 100 1269664 12697 100 86 1087519 10875.19 Galaxy13-[dm_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.85.bam Galaxy13-[dm_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.85.bam.75.bam Galaxy13-[dm_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.85.bam.50.bam Galaxy13-[dm_DS27.7_lib1_010491_AS-224621_A2.filterbam_step12].bam.85.bam.25.bam
lib2 Galaxy3-[dm_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam 10493 10952610 2528443 100 1433355 14334 89 76 1087519 10875.19 Galaxy3-[dm_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.75.bam Galaxy3-[dm_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.75.bam.75.bam Galaxy3-[dm_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.75.bam.50.bam Galaxy3-[dm_DS27.7_lib2_AS-224643-LR-34211_R2.filterbam_step12].bam.75.bam.25.bam
Live drosophila Rep2 34.1 lib1 Galaxy140-[dm_DS34.1.filterbam_step12].bam 200 4172314 20862 61
34.2 lib1 Galaxy10-[dm_DS34.2.filterbam_step12].bam 13628 22320215 5463390 200 3570478 17852 71 61 2175038 10875.19 Galaxy10-[dm_DS34.2.filterbam_step12].bam.60.bam Galaxy10-[dm_DS34.2.filterbam_step12].bam.60.bam.75.bam Galaxy10-[dm_DS34.2.filterbam_step12].bam.60.bam.50.bam Galaxy10-[dm_DS34.2.filterbam_step12].bam.60.bam.25.bam
Glyoxal drosophila Rep2 34.5 lib1 Galaxy7-[dm_DS34.5.filterbam_step12].bam 13628 18911302 2778953 100 1344433 13444 94 81 1087519 10875.19 Galaxy7-[dm_DS34.5.filterbam_step12].bam.80.bam Galaxy7-[dm_DS34.5.filterbam_step12].bam.80.bam.75.bam Galaxy7-[dm_DS34.5.filterbam_step12].bam.80.bam.50.bam Galaxy7-[dm_DS34.5.filterbam_step12].bam.80.bam.25.bam