diff --git a/brainglobe_segmentation/regions/analysis.py b/brainglobe_segmentation/regions/analysis.py index 35a098d..f3f07c3 100644 --- a/brainglobe_segmentation/regions/analysis.py +++ b/brainglobe_segmentation/regions/analysis.py @@ -5,7 +5,7 @@ from napari.qt.threading import thread_worker from skimage.measure import regionprops_table -from brainreg_segment.atlas.utils import lateralise_atlas_image +from brainglobe_segmentation.atlas.utils import lateralise_atlas_image @thread_worker diff --git a/brainglobe_segmentation/segment.py b/brainglobe_segmentation/segment.py index a7ca00c..18c04df 100644 --- a/brainglobe_segmentation/segment.py +++ b/brainglobe_segmentation/segment.py @@ -8,11 +8,11 @@ from qtpy import QtCore from qtpy.QtWidgets import QFileDialog, QGridLayout, QGroupBox, QLabel, QWidget -from brainreg_segment.atlas.utils import ( +from brainglobe_segmentation.atlas.utils import ( get_available_atlases, structure_from_viewer, ) -from brainreg_segment.layout.gui_constants import ( +from brainglobe_segmentation.layout.gui_constants import ( BOUNDARIES_STRING, COLUMN_WIDTH, DISPLAY_REGION_INFO, @@ -23,15 +23,21 @@ WINDOW_HEIGHT, WINDOW_WIDTH, ) -from brainreg_segment.layout.gui_elements import add_button, add_combobox -from brainreg_segment.layout.utils import display_warning -from brainreg_segment.paths import Paths -from brainreg_segment.regions.IO import export_label_layers, save_label_layers +from brainglobe_segmentation.layout.gui_elements import ( + add_button, + add_combobox, +) +from brainglobe_segmentation.layout.utils import display_warning +from brainglobe_segmentation.paths import Paths +from brainglobe_segmentation.regions.IO import ( + export_label_layers, + save_label_layers, +) ### SEGMENTATION -from brainreg_segment.segmentation_panels.regions import RegionSeg -from brainreg_segment.segmentation_panels.tracks import TrackSeg -from brainreg_segment.tracks.IO import export_splines, save_track_layers +from brainglobe_segmentation.segmentation_panels.regions import RegionSeg +from brainglobe_segmentation.segmentation_panels.tracks import TrackSeg +from brainglobe_segmentation.tracks.IO import export_splines, save_track_layers ### LAYOUT HELPERS diff --git a/brainglobe_segmentation/segmentation_panels/regions.py b/brainglobe_segmentation/segmentation_panels/regions.py index d92af15..4b856b0 100644 --- a/brainglobe_segmentation/segmentation_panels/regions.py +++ b/brainglobe_segmentation/segmentation_panels/regions.py @@ -1,7 +1,7 @@ # RegionSeg from qtpy.QtWidgets import QGridLayout, QGroupBox -from brainreg_segment.layout.gui_constants import ( +from brainglobe_segmentation.layout.gui_constants import ( BRUSH_SIZE, CALCULATE_VOLUMES_DEFAULT, COLUMN_WIDTH, @@ -11,13 +11,13 @@ SEGM_METHODS_PANEL_ALIGN, SUMMARIZE_VOLUMES_DEFAULT, ) -from brainreg_segment.layout.gui_elements import ( +from brainglobe_segmentation.layout.gui_elements import ( add_button, add_checkbox, ) -from brainreg_segment.layout.utils import display_info, display_warning -from brainreg_segment.regions.analysis import region_analysis -from brainreg_segment.regions.layers import ( +from brainglobe_segmentation.layout.utils import display_info, display_warning +from brainglobe_segmentation.regions.analysis import region_analysis +from brainglobe_segmentation.regions.layers import ( add_existing_region_segmentation, add_new_region_layer, add_region_from_existing_layer, diff --git a/brainglobe_segmentation/segmentation_panels/tracks.py b/brainglobe_segmentation/segmentation_panels/tracks.py index ba1b9ae..78af874 100644 --- a/brainglobe_segmentation/segmentation_panels/tracks.py +++ b/brainglobe_segmentation/segmentation_panels/tracks.py @@ -4,8 +4,8 @@ import numpy as np from qtpy.QtWidgets import QGridLayout, QGroupBox -from brainreg_segment.image.utils import create_KDTree_from_image -from brainreg_segment.layout.gui_constants import ( +from brainglobe_segmentation.image.utils import create_KDTree_from_image +from brainglobe_segmentation.layout.gui_constants import ( COLUMN_WIDTH, FIT_DEGREE_DEFAULT, POINT_SIZE, @@ -17,15 +17,15 @@ SUMMARISE_TRACK_DEFAULT, TRACK_FILE_EXT, ) -from brainreg_segment.layout.gui_elements import ( +from brainglobe_segmentation.layout.gui_elements import ( add_button, add_checkbox, add_float_box, add_int_box, ) -from brainreg_segment.layout.utils import display_info, display_warning -from brainreg_segment.tracks.analysis import track_analysis -from brainreg_segment.tracks.layers import ( +from brainglobe_segmentation.layout.utils import display_info, display_warning +from brainglobe_segmentation.tracks.analysis import track_analysis +from brainglobe_segmentation.tracks.layers import ( add_existing_track_layers, add_new_track_layer, add_track_from_existing_layer, diff --git a/brainglobe_segmentation/tracks/analysis.py b/brainglobe_segmentation/tracks/analysis.py index e0435a9..de43fee 100644 --- a/brainglobe_segmentation/tracks/analysis.py +++ b/brainglobe_segmentation/tracks/analysis.py @@ -1,7 +1,7 @@ import numpy as np import pandas as pd -from brainreg_segment.tracks.fit import spline_fit +from brainglobe_segmentation.tracks.fit import spline_fit def track_analysis(