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CITATION.cff
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# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: brainreg
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Adam
family-names: Tyson
email: [email protected]
affiliation: 'Sainsbury Wellcome Centre, University College London'
- given-names: Charly
family-names: Rousseau
- given-names: Stephen
family-names: Lenzi
- given-names: BrainGlobe
family-names: Developers
email: [email protected]
repository-code: 'https://github.com/brainglobe/brainreg'
url: 'https://brainglobe.info'
abstract: Automated multi-atlas whole-brain microscopy registration.
license: BSD-3-Clause
date-released: '2024-01-25'
year: 2024
preferred-citation:
type: article
authors:
- given-names: Adam
family-names: Tyson
affiliation: 'Sainsbury Wellcome Centre, University College London'
- given-names: Mateo
family-names: Velez-Fort
- given-names: Charly V.
family-names: Rousseau
- given-names: Lee
family-names: Cossell
- given-names: Chryssanthi
family-names: Tsitoura
- given-names: Stephen C.
family-names: Lenzi
- given-names: Horst A.
family-names: Obenhaus
- given-names: Federico
family-names: Claudi
- given-names: Tiago
family-names: Branco
- given-names: Troy W.
family-names: Margrie
doi: "10.1038/s41598-021-04676-9"
url: "https://doi.org/10.1038/s41598-021-04676-9"
journal: "Scientific Reports"
month: 1
year: 2022
title: "Accurate determination of marker location within whole-brain microscopy images"
issue: 1
volume: 12
references:
- type: article
title: AMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
journal: Nature Communications
volume: 7
pages: 1-9
doi: 10.1038/ncomms11879
year: 2016
date-published: 2016-07-07
authors:
- family-names: "Niedworok"
given-names: "C."
- family-names: "Brown"
given-names: "A."
- family-names: "Jorge"
given-names: "M."
- family-names: "Osten"
given-names: "P."
- family-names: "Ourselin"
given-names: "S."
- family-names: "Modat"
given-names: "M."
- family-names: "Margrie"
given-names: "T."
references:
- type: article
title: BrainGlobe Atlas API a common interface for neuroanatomical atlases
journal: Journal of Open Source Software
volume: 5
pages: 2668
doi: 10.21105/joss.02668
year: 2020
date-published: 2020-09-04
authors:
- family-names: "Claudi"
given-names: "F."
- family-names: "Petrucco"
given-names: "L."
- family-names: "Tyson"
given-names: "A."
- family-names: "Branco"
given-names: "T."
- family-names: "Margrie"
given-names: "T."
- family-names: "Portugues"
given-names: "R."