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Avg depth for multiple BAMs with BED input #165

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Kiran936 opened this issue Dec 14, 2021 · 1 comment
Open

Avg depth for multiple BAMs with BED input #165

Kiran936 opened this issue Dec 14, 2021 · 1 comment

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@Kiran936
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Hi How to Calculate Avg depth for multiple BAMs with BED input
@brentp
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brentp commented Dec 14, 2021

Hi, mosdepth operates on one bam/cram at a time. If you want average across samples, you'd have to do that your self from the per-base or the regions.bed.gz

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@brentp @Kiran936