Report Modules: panoply_normalize_ms_data_report

panoply_normalize_ms_data_report

Description

This module creates an R Markdown report for the panoply_normalize_ms_data module.

The report provides:

• Table summarizing the number of features, number of samples and normalization method applied.

• Interactive box-whisker plots visualizing the data distributions before normalization.

• Interactive box-whisker plots visualizing the data distributions after normalization.

• Interactive line plot depicting normalization coefficients (center, scale) across samples.

Input

• tarball: (.tar file) tarball from panoply_normalize_ms_data
• label: (String) label used in the report title
• type: (String) data type
• tmpDir: (String, default="tmp") name of directory used to extract the tarball
• yaml: (File) updated yaml parameter file output from panoply_normalize_ms_data which indicates if normalization was performed

Output

• report: (.html file) Interactive R Markown report. If no normalization has been applied (e.g. the data was already normalized), a placeholder file with a respective message will be returned.