From 739353e10b712b5262434ecead29d4f78734a8fe Mon Sep 17 00:00:00 2001
From: Yueyao Gao <gaoyueya@broadinstitute.org>
Date: Mon, 20 May 2024 14:49:21 -0400
Subject: [PATCH] add yes to fissmop command

---
 TAG_Mop/TAG_Mop.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/TAG_Mop/TAG_Mop.wdl b/TAG_Mop/TAG_Mop.wdl
index d78c51cb..e5ca414d 100644
--- a/TAG_Mop/TAG_Mop.wdl
+++ b/TAG_Mop/TAG_Mop.wdl
@@ -121,7 +121,7 @@ workflow TAG_Mop{
             if [ $(cat mop_dry_run.txt | wc -l) -eq 0 ]; then
                 echo "No files to mop"
             else
-                fissfc mop -w ~{workspaceName} -p ~{namespace}
+                fissfc mop --yes -w ~{workspaceName} -p ~{namespace}
             fi
         >>>
         output{