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1 parent 437ddf8 commit 6e34b82Copy full SHA for 6e34b82
analyze_run.py
@@ -332,6 +332,7 @@
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# apply ntc_check to the t13_hit_output df to generate a list of all ntc positive assays
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assigned_signal_norm_2 = pd.DataFrame(assigned_norms['signal_norm_raw']).copy() # make a copy of assigned_signal_norm dataframe
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+
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high_raw_ntc_signal = qual_checks.ntc_check(assigned_signal_norm_2)
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QC_lines.append("4. Evaluation of No Target Control (NTC) Contamination \n")
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if high_raw_ntc_signal:
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