diff --git a/analyze_run.py b/analyze_run.py index ccb701c..275da1c 100644 --- a/analyze_run.py +++ b/analyze_run.py @@ -332,6 +332,7 @@ # apply ntc_check to the t13_hit_output df to generate a list of all ntc positive assays assigned_signal_norm_2 = pd.DataFrame(assigned_norms['signal_norm_raw']).copy() # make a copy of assigned_signal_norm dataframe + high_raw_ntc_signal = qual_checks.ntc_check(assigned_signal_norm_2) QC_lines.append("4. Evaluation of No Target Control (NTC) Contamination \n") if high_raw_ntc_signal: