v5.1.0

fsalbeez · fsalbeez · commit 72062c6b0a49 · 2025-02-07T11:52:45.000-05:00
diff --git a/analyze_run.py b/analyze_run.py
@@ -837,7 +837,7 @@
 # instantiate Flagger from flags.py
 flagger = Flagger()
 
-invalid_assays, invalid_samples, flagged_files, processed_samples, cont_ntc_sample, cont_ntc_assay = flagger.assign_flags(fail_nocrRNA_check_df, high_raw_ntc_signal_df, rnasep_df_heatmap, QC_score_per_assay_df, t13_hit_output, rounded_t13_quant_norm, summary_samples_df, rounded_ntc_thresholds_output, t13_hit_binary_output)
+invalid_assays, invalid_samples, flagged_files, processed_samples = flagger.assign_flags(fail_nocrRNA_check_df, high_raw_ntc_signal_df, rnasep_df_heatmap, QC_score_per_assay_df, t13_hit_output, rounded_t13_quant_norm, summary_samples_df, rounded_ntc_thresholds_output, t13_hit_binary_output)
 
 fl_t13_hit_output = flagged_files[0] # Results_Summary
 fl_rounded_t13_quant_norm = flagged_files[1] # NTC_Normalized_Quantitative_Results_Summary
diff --git a/flags.py b/flags.py
@@ -304,4 +304,4 @@ def assign_flags(self, fail_nocrRNA_check_df, high_raw_ntc_signal_df, rnasep_df,
 
             flagged_files.append(flagged_file) # add flagged file to the list          
 
-        return invalid_assays, invalid_samples, flagged_files, processed_samples, cont_ntc_sample, cont_ntc_assay
+        return invalid_assays, invalid_samples, flagged_files, processed_samples

Original file line number	Diff line number	Diff line change
`@@ -304,4 +304,4 @@ def assign_flags(self, fail_nocrRNA_check_df, high_raw_ntc_signal_df, rnasep_df,`
`304`	`304`
`305`	`305`	`flagged_files.append(flagged_file) # add flagged file to the list`
`306`	`306`
`307`		`- return invalid_assays, invalid_samples, flagged_files, processed_samples, cont_ntc_sample, cont_ntc_assay`
	`307`	`+ return invalid_assays, invalid_samples, flagged_files, processed_samples`