v5.4.2

Author: fsalbeez

analyze_run.py

@@ -184,9 +184,6 @@
 # create df of filtered assigned_signal_norm by applying the NTC check to remove any NTCs whose raw signal suggests contamination
 assigned_signal_norm_with_NTC_check = ntcCheck.ntc_cont(assigned_signal_norm) # feed this into MedianSort
 
-# collect the samples_list after running NTC Contamination Check, in case NTCs were removed
-#samples_list = assigned_signal_norm_with_NTC_check['sample'].unique()
-
 # temporarily save assigned_signal_norm_with_NTC_check
 assigned_signal_norm_with_NTC_check.to_csv(os.path.join(rd_subfolder, 'assigned_signal_norm_with_NTC_check.csv'), index=True)