From d1a2edd77b0135aec4f25cf8c0c5e41a66df70df Mon Sep 17 00:00:00 2001
From: albeez <albeez@broadinstitute.org>
Date: Fri, 10 Jan 2025 14:07:08 -0500
Subject: [PATCH] Update qual_checks.py

---
 qual_checks.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/qual_checks.py b/qual_checks.py
index b18c6c5..0f52a11 100644
--- a/qual_checks.py
+++ b/qual_checks.py
@@ -89,7 +89,8 @@ def cpc_check(self, binary_t13_df):
                     
         else:
             # for the rows containing CPC, collect the (row name, column name) for cells that are negative
-            negative_cpc_dict = {}
+            negative_cpc_dict = {'error': 'issue'} 
+            """ 
             for row_name, row in cpc_rows.iterrows():
                 negative_cpc_assays = []
                 for col_name, cell_value in row.items():
@@ -97,9 +98,10 @@ def cpc_check(self, binary_t13_df):
                         negative_cpc_assays.append(col_name)
                 if negative_cpc_assays:
                     negative_cpc_dict[row_name] = negative_cpc_assays
+            """
             # create a df to store the results
             negative_cpc_df = pd.DataFrame({col: pd.Series(values) for col, values in negative_cpc_dict.items()})
-            
+           
         # return cpc_rvp_rows, cpc_p1_rows, cpc_p2_rows, negative_cpc_p1_assays, negative_cpc_p2_assays, p1_assays, p2_assays, rvp_assays, assays, cpc_rows, negative_cpc_df, negative_cpc_dict
         return negative_cpc_df