Fix FilterGenotypes config template

mwalker174 · mwalker174 · commit 7237b4ad856a · 2024-07-02T10:07:15.000-04:00
diff --git a/inputs/templates/terra_workspaces/cohort_mode/workflow_configurations/FilterGenotypes.json.tmpl b/inputs/templates/terra_workspaces/cohort_mode/workflow_configurations/FilterGenotypes.json.tmpl
@@ -36,7 +36,6 @@
 
   "FilterGenotypes.linux_docker": "${workspace.linux_docker}",
   "FilterGenotypes.gatk_docker": "${workspace.gq_recalibrator_docker}",
-  "FilterGenotypes.gq_recalibrator_docker": "${workspace.gq_recalibrator_docker}",
   "FilterGenotypes.sv_base_mini_docker": "${workspace.sv_base_mini_docker}",
   "FilterGenotypes.sv_pipeline_docker": "${workspace.sv_pipeline_docker}"
 }

Original file line number	Diff line number	Diff line change
`@@ -36,7 +36,6 @@`
`36`	`36`
`37`	`37`	`"FilterGenotypes.linux_docker": "${workspace.linux_docker}",`
`38`	`38`	`"FilterGenotypes.gatk_docker": "${workspace.gq_recalibrator_docker}",`
`39`		`- "FilterGenotypes.gq_recalibrator_docker": "${workspace.gq_recalibrator_docker}",`
`40`	`39`	`"FilterGenotypes.sv_base_mini_docker": "${workspace.sv_base_mini_docker}",`
`41`	`40`	`"FilterGenotypes.sv_pipeline_docker": "${workspace.sv_pipeline_docker}"`
`42`	`41`	`}`