diff --git a/browser/src/PublicationsPage.tsx b/browser/src/PublicationsPage.tsx index 5697f2e19..d494e8f39 100644 --- a/browser/src/PublicationsPage.tsx +++ b/browser/src/PublicationsPage.tsx @@ -10,6 +10,66 @@ const Citation = styled.cite` line-height: 1.4; ` +type PaperCitationProps = { + prefix?: string + authorList: string + title: string + journal: string + issue?: string + pages?: string + year: string + doiLink?: string + citationDownloadLink?: string + pmid?: string + pmcid?: string +} + +const PaperCitation = ({ + prefix, + authorList, + title, + journal, + issue, + pages, + year, + doiLink, + citationDownloadLink, + pmid, + pmcid, +}: PaperCitationProps) => { + return ( + // @ts-expect-error + + + {prefix && ( + <> + {prefix}:{' '} + + )} + <>{`${authorList} ${title} `} + {journal} + <>{`. ${issue ? `${issue}, ` : ''}${pages || ''} (${year}).`} + <> + {doiLink && ( + + {/* @ts-expect-error */} + {doiLink}{' '} + + )} + {pmid && <>PMID: {pmid}} + {pmcid && PMCID: {pmcid}} + + {citationDownloadLink && ( +
+ {/* @ts-expect-error */} + Download citation{' '} +
+ )} + + + ) +} + export default () => ( @@ -28,28 +88,24 @@ export default () => ( Current flagship paper (v3): {/* @ts-expect-error */} - {/* @ts-expect-error */} - - - Chen, S.*, Francioli, L. C.*, Goodrich, J. K., Collins, R. L., Kanai, M., Wang, Q., - Alföldi, J., Watts, N. A., Vittal, C., Gauthier, L. D., Poterba, T., Wilson, M. W., - Tarasova, Y., Phu, W., Grant, R., Yohannes, M. T., Koenig, Z., Farjoun, Y., Banks, E., - Donnelly, S., Gabriel, S., Gupta, N., Ferriera, S., Tolonen, C., Novod, S., Bergelson, - L., Roazen, D., Ruano-Rubio, V., Covarrubias, M., Llanwarne, C., Petrillo, N., Wade, G., - Jeandet, T., Munshi, R., Tibbetts, K., Genome Aggregation Database (gnomAD) Consortium, - O’Donnell-Luria, A., Solomonson, M., Seed, C., Martin, A. R., Talkowski, M. E., Rehm, H. - L., Daly, M. J., Tiao, G., Neale, B. M.†, MacArthur, D. G.† & Karczewski, K. J. A - genomic mutational constraint map using variation in 76,156 human genomes{' '} - Nature 625, 92–100 (2024). {/* @ts-expect-error */} - - https://doi.org/10.1038/s41586-023-06045-0 - {' '} - {/* @ts-expect-error */} - - Download citation - - - + * contributed equally
† contributed equally @@ -58,196 +114,292 @@ export default () => ( Previous flagship papers: {/* @ts-expect-error */} - {/* @ts-expect-error */} - - v2:{' '} - - Karczewski, K. J., Francioli, L. C., Tiao, G., Cummings, B. B., Alföldi, J., Wang, Q., - Collins, R. L., Laricchia, K. M., Ganna, A., Birnbaum, D. P., Gauthier, L. D., Brand, - H., Solomonson, M., Watts, N. A., Rhodes, D., Singer-Berk, M., England, E. M., Seaby, E. - G., Kosmicki, J. A., … MacArthur, D. G. The mutational constraint spectrum quantified - from variation in 141,456 humans. Nature 581, 434–443 (2020).{' '} - {/* @ts-expect-error */} - - https://doi.org/10.1038/s41586-020-2308-7 - {' '} - {/* @ts-expect-error */} - - Download citation - - - - {/* @ts-expect-error */} - - ExAC:{' '} - - Lek, M., Karczewski, K. J.*, Minikel, E. V.*, Samocha, K. E.*, Banks, E., Fennell, T., - O’Donnell-Luria, A. H., Ware, J. S., Hill, A. J., Cummings, B. B., Tukiainen, T., - Birnbaum, D. P., Kosmicki, J. A., Duncan, L. E., Estrada, K., Zhao, F., Zou, J., - Pierce-Hoffman, E., … Daly, M. J., MacArthur, D. G. & Exome Aggregation Consortium. - Analysis of protein-coding genetic variation in 60,706 humans. Nature 536, - 285–291 (2016). {/* @ts-expect-error */} - - https://doi.org/10.1038/nature19057 - {' '} - {/* @ts-expect-error */} - - Download citation - - - + + * contributed equally

- Remaining publications:{/* @ts-expect-error */} + Remaining publications: + {/* @ts-expect-error */} - {/* @ts-expect-error */} - - - Guo, M. H.†, Francioli, L. C.†, Stenton, S. L., Goodrich, J. K., Watts, N. A., + + + - https://doi.org/10.1038/s41588-023-01608-3 - - - - {/* @ts-expect-error */} - - - Gudmundsson, S., Singer-Berk, M., Watts, N. A., Phu, W., Goodrich, J. K., Solomonson, - M., Genome Aggregation Database (gnomAD) Consortium, Rehm, H. L., MacArthur, D. G., - O’Donnell-Luria, A. Variant interpretation using population databases: Lessons from - gnomAD. Human Mutation 1-19 (2021). {/* @ts-expect-error */} - - https://doi.org/10.1002/humu.24309 - - - - {/* @ts-expect-error */} - - - Laricchia, K. M.*, Lake, N. J.*, Watts, N. A., Shand, M., Haessly, A., Gauthier, L. D., + O’Donnell-Luria, A., Karczewski, K., MacArthur, D. G., Samocha, K. E." + title="Inferring compound + heterozygosity from large-scale exome sequencing data." + journal="Nature Genetics" + issue="56" + pages="152-161" + year="2024" + doiLink="https://doi.org/10.1038/s41588-023-01608-3" + pmid="38057443" + pmcid="PMC10872287" + /> + + + + + + + + + - https://doi.org/10.1101/gr.276013.121 - - - - {/* @ts-expect-error */} - - - Collins, R. L.*, Brand, H.*, Karczewski, K. J., Zhao, X., Alföldi, J., Francioli, L. C., - Khera, A. V., Lowther, C., Gauthier, L. D., Wang, H., Watts, N. A., Solomonson, M., - O’Donnell-Luria, A., Baumann, A., Munshi, R., Walker, M., Whelan, C., Huang, Y., - Brookings, T., … Talkowski, M. E. A structural variation reference for medical and - population genetics. Nature 581, 444–451 (2020). {/* @ts-expect-error */} - - https://doi.org/10.1038/s41586-020-2287-8 - - - - {/* @ts-expect-error */} - - - Cummings, B. B., Karczewski, K. J., Kosmicki, J. A., Seaby, E. G., Watts, N. A., - Singer-Berk, M., Mudge, J. M., Karjalainen, J., Kyle Satterstrom, F., O’Donnell-Luria, - A., Poterba, T., Seed, C., Solomonson, M., Alföldi, J., The Genome Aggregation Database - Production Team, The Genome Aggregation Database Consortium, Daly, M. J., & MacArthur, - D. G. Transcript expression-aware annotation improves rare variant interpretation.{' '} - Nature 581, 452–458 (2020). {/* @ts-expect-error */} - - https://doi.org/10.1038/s41586-020-2329-2 - - - - {/* @ts-expect-error */} - - - Minikel, E. V., Karczewski, K. J., Martin, H. C., Cummings, B. B., Whiffin, N., Rhodes, - D., Alföldi, J., Trembath, R. C., van Heel, D. A., Daly, M. J., Genome Aggregation - Database Production Team, Genome Aggregation Database Consortium, Schreiber, S. L., & - MacArthur, D. G. Evaluating potential drug targets through human loss-of-function - genetic variation. Nature 581, 459–464 (2020). {/* @ts-expect-error */} - - https://doi.org/10.1038/s41586-020-2267-z - - - - {/* @ts-expect-error */} - - - Wang, Q., Pierce-Hoffman, E., Cummings, B. B., Karczewski, K. J., Alföldi, J., - Francioli, L. C., Gauthier, L. D., Hill, A. J., O’Donnell-Luria, A. H., Genome - Aggregation Database (gnomAD) Production Team, Genome Aggregation Database (gnomAD) - Consortium, & MacArthur, D. G. Landscape of multi-nucleotide variants in 125,748 human - exomes and 15,708 genomes. Nature Communications 11, 2539 (2020).{' '} - {/* @ts-expect-error */} - - https://doi.org/10.1038/s41467-019-12438-5 - - - - {/* @ts-expect-error */} - - - Whiffin, N.*, Armean, I. M.*, Kleinman, A.*, Marshall, J. L., Minikel, E. V., Goodrich, - J. K., Quaife, N. M., Cole, J. B., Wang, Q., Karczewski, K. J., Cummings, B. B., - Francioli, L., Laricchia, K., Guan, A., Alipanahi, B., Morrison, P., Baptista, M. A. S., - Merchant, K. M., Genome Aggregation Database Production Team, … Cannon, P.†, MacArthur, - D. G.† The effect of LRRK2 loss-of-function variants in humans. Nature Medicine{' '} - (2020). {/* @ts-expect-error */} - - https://doi.org/10.1038/s41591-020-0893-5 - - - - {/* @ts-expect-error */} - - - Whiffin, N., Karczewski, K. J., Zhang, X., Chothani, S., Smith, M. J., Gareth Evans, D., + Calvo, S. E.†" + title="Mitochondrial DNA variation across 56,434 individuals in gnomAD." + journal="Genome Research" + issue="32" + pages="569-582" + year="2022" + doiLink="https://doi.org/10.1101/gr.276013.121" + pmid="35074858" + /> + + - https://doi.org/10.1038/s41467-019-10717-9 - - - - {/* @ts-expect-error */} - - - Karczewski, K. J., Gauthier, L. D., & Daly, M. J. Technical artifact drives apparent - deviation from Hardy-Weinberg equilibrium at CCR5-∆32 and other variants in gnomAD{' '} - bioRxiv (p. 784157). {/* @ts-expect-error */} - - https://doi.org/10.1101/784157 - - - - {/* @ts-expect-error */} - - - Karczewski, K. J., Weisburd, B., Thomas, B., Solomonson, M., Ruderfer, D. M., Kavanagh, + G.†, & Ware, J. S.†" + title="Characterising the loss-of-function impact of 5’ untranslated region + variants in 15,708 individuals." + journal="Nature Communications" + issue="11" + pages="2523" + year="2020" + doiLink="https://doi.org/10.1038/s41467-019-10717-9" + pmid="32461616" + /> + + + + + + - https://doi.org/10.1093/nar/gkw971 - - - + Aggregation Consortium, Daly, M. J., MacArthur, D. G." + title="The ExAC browser: displaying + reference data information from over 60000 exomes." + journal="Nucleic Acids Research" + issue="Volume 45, Issue D1" + pages="D840-D845" + year="2017" + doiLink="https://doi.org/10.1093/nar/gkw971" + pmid="27899611" + pmcid="PMC5210650" + /> * contributed equally
† contributed equally diff --git a/browser/src/__snapshots__/PublicationsPage.spec.tsx.snap b/browser/src/__snapshots__/PublicationsPage.spec.tsx.snap index 3bc1a45eb..a195d7425 100644 --- a/browser/src/__snapshots__/PublicationsPage.spec.tsx.snap +++ b/browser/src/__snapshots__/PublicationsPage.spec.tsx.snap @@ -138,29 +138,36 @@ exports[`Publications Page has no unexpected changes 1`] = ` - Chen, S.*, Francioli, L. C.*, Goodrich, J. K., Collins, R. L., Kanai, M., Wang, Q., Alföldi, J., Watts, N. A., Vittal, C., Gauthier, L. D., Poterba, T., Wilson, M. W., Tarasova, Y., Phu, W., Grant, R., Yohannes, M. T., Koenig, Z., Farjoun, Y., Banks, E., Donnelly, S., Gabriel, S., Gupta, N., Ferriera, S., Tolonen, C., Novod, S., Bergelson, L., Roazen, D., Ruano-Rubio, V., Covarrubias, M., Llanwarne, C., Petrillo, N., Wade, G., Jeandet, T., Munshi, R., Tibbetts, K., Genome Aggregation Database (gnomAD) Consortium, O’Donnell-Luria, A., Solomonson, M., Seed, C., Martin, A. R., Talkowski, M. E., Rehm, H. L., Daly, M. J., Tiao, G., Neale, B. M.†, MacArthur, D. G.† & Karczewski, K. J. A genomic mutational constraint map using variation in 76,156 human genomes - + Chen, S.*, Francioli, L. C.*, Goodrich, J. K., Collins, R. L., Kanai, M., Wang, Q., Alföldi, J., Watts, N. A., Vittal, C., Gauthier, L. D., Poterba, T., Wilson, M. W., Tarasova, Y., Phu, W., Grant, R., Yohannes, M. T., Koenig, Z., Farjoun, Y., Banks, E., Donnelly, S., Gabriel, S., Gupta, N., Ferriera, S., Tolonen, C., Novod, S., Bergelson, L., Roazen, D., Ruano-Rubio, V., Covarrubias, M., Llanwarne, C., Petrillo, N., Wade, G., Jeandet, T., Munshi, R., Tibbetts, K., Genome Aggregation Database (gnomAD) Consortium, O’Donnell-Luria, A., Solomonson, M., Seed, C., Martin, A. R., Talkowski, M. E., Rehm, H. L., Daly, M. J., Tiao, G., Neale, B. M.†, MacArthur, D. G.† & Karczewski, K. J. A genomic mutational constraint map using variation in 76,156 human genomes. Nature - 625, 92–100 (2024). - - https://doi.org/10.1038/s41586-023-06045-0 - - - - Download citation - + . 625, 92-100 (2024). + + + + https://doi.org/10.1038/s41586-023-06045-0 + + + + PMID: + 38057664 +

+ + Download citation + + +
* contributed equally @@ -177,72 +184,87 @@ exports[`Publications Page has no unexpected changes 1`] = `
  • - - v2 - - : - + + v2 + + : + Karczewski, K. J., Francioli, L. C., Tiao, G., Cummings, B. B., Alföldi, J., Wang, Q., Collins, R. L., Laricchia, K. M., Ganna, A., Birnbaum, D. P., Gauthier, L. D., Brand, H., Solomonson, M., Watts, N. A., Rhodes, D., Singer-Berk, M., England, E. M., Seaby, E. G., Kosmicki, J. A., … MacArthur, D. G. The mutational constraint spectrum quantified from variation in 141,456 humans. Nature - 581, 434–443 (2020). - - - https://doi.org/10.1038/s41586-020-2308-7 - - - - Download citation - + . 581, 434-443 (2020). + + + + https://doi.org/10.1038/s41586-020-2308-7 + + + + PMID: + 32461654 +
    + + Download citation + + +
  • - - ExAC - - : - - Lek, M., Karczewski, K. J.*, Minikel, E. V.*, Samocha, K. E.*, Banks, E., Fennell, T., O’Donnell-Luria, A. H., Ware, J. S., Hill, A. J., Cummings, B. B., Tukiainen, T., Birnbaum, D. P., Kosmicki, J. A., Duncan, L. E., Estrada, K., Zhao, F., Zou, J., Pierce-Hoffman, E., … Daly, M. J., MacArthur, D. G. & Exome Aggregation Consortium. Analysis of protein-coding genetic variation in 60,706 humans. + + ExAC + + : + + Lek, M., Karczewski, K. J.*, Minikel, E. V.*, Samocha, K. E.*, Banks, E., Fennell, T., O’Donnell-Luria, A. H., Ware, J. S., Hill, A. J., Cummings, B. B., Tukiainen, T., Birnbaum, D. P., Kosmicki, J. A., Duncan, L. E., Estrada, K., Zhao, F., Zou, J., Pierce-Hoffman, E., … Daly, M. J., MacArthur, D. G. & Exome Aggregation Consortium. Analysis of protein-coding genetic variation in 60,706 humans Nature - 536, 285–291 (2016). - - https://doi.org/10.1038/nature19057 - - - - Download citation - + . 536, 285-291 (2016). + + + + https://doi.org/10.1038/nature19057 + + + + PMID: + 27535533 +
    + + Download citation + + +
    • * contributed equally @@ -253,6 +275,68 @@ exports[`Publications Page has no unexpected changes 1`] = `