browser/src/GenePage/GeneInfo.tsx

@@ -77,7 +77,7 @@ const GeneInfo = ({ gene }: GeneInfoProps) => {
     : null
 
   const ucscReferenceGenomeId = gene.reference_genome === 'GRCh37' ? 'hg19' : 'hg38'
-  const gencodeVersion = gene.reference_genome === 'GRCh37' ? '19' : '35'
+  const gencodeVersion = gene.reference_genome === 'GRCh37' ? '19' : '39'
 
   const otherTranscripts = gene.transcripts.filter(
     (transcript) =>

data-pipeline/src/data_pipeline/datasets/clinvar.py

@@ -127,7 +127,8 @@ def _parse_submission(submission_element, trait_mapping_list_element):
         condition_medgen_mapping = _associate_condition_with_medgen_id(
             submission_element, trait_mapping_list_element, trait_element
         )
-        submission["conditions"].append(condition_medgen_mapping)
+        if condition_medgen_mapping is not None:
+            submission["conditions"].append(condition_medgen_mapping)
 
     return submission
 

graphql-api/src/queries/clinvar-variant-queries.ts

@@ -9,12 +9,8 @@ import { getConsequenceForContext } from './variant-datasets/shared/transcriptCo
 import largeGenes from './helpers/large-genes'
 
 const CLINVAR_VARIANT_INDICES = {
-  // GRCh37: 'clinvar_grch37_variants',
-  // GRCh38: 'clinvar_grch38_variants',
-  // TODO: revert back to using alias'ed indexes once we are confident this is
-  //   stable in production
-  GRCh37: 'clinvar_grch37_variants-2024-11-08--19-22',
-  GRCh38: 'clinvar_grch38_variants-2024-11-08--13-08',
+  GRCh37: 'clinvar_grch37_variants',
+  GRCh38: 'clinvar_grch38_variants',
 }
 
 // ================================================================================================

graphql-api/src/queries/gene-queries.ts

@@ -3,10 +3,8 @@ import { withCache } from '../cache'
 import { fetchAllSearchResults } from './helpers/elasticsearch-helpers'
 
 const GENE_INDICES = {
-  // GRCh37: 'genes_grch37',
-  // GRCh38: 'genes_grch38',
-  GRCh37: 'genes_grch37-2024-11-15--15-23',
-  GRCh38: 'genes_grch38-2024-11-20--16-28',
+  GRCh37: 'genes_grch37',
+  GRCh38: 'genes_grch38',
 }
 
 const _fetchGeneById = async (esClient: any, geneId: any, referenceGenome: any) => {