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5e65538
cnv notebook draft
Sep 14, 2023
46ad865
inital pipelines and task creation
Sep 21, 2023
d0103d8
create cnv resolvers
Sep 27, 2023
0110036
create cnv queries
Sep 27, 2023
a9adba5
create cnv graphql types
Sep 27, 2023
2d3959a
create cnvs pipeline and tasks
Sep 27, 2023
549d1fe
add cnv dataset as an enum dataset-id
Oct 3, 2023
12ad7ad
add cnv to gene type
Oct 3, 2023
eef8cfc
add cnvs to query type
Oct 3, 2023
a1f257a
add cnvs to region type
Oct 3, 2023
72853ba
add cnv resolvers to schema
Oct 3, 2023
282385e
update singular and plural naming
Oct 3, 2023
197ab86
python black formatter
Oct 3, 2023
52dad61
wip resolvers and queries
Oct 3, 2023
36dae00
minor pipeline edits
Oct 4, 2023
cfcf644
add CNVDatasetId to Gene, Query, Region types
Oct 4, 2023
affe4bb
fix resolver and query errors
Oct 4, 2023
526191b
add cnvs to dataset
Oct 6, 2023
57a511e
add textOrMissingTextWarning
Oct 6, 2023
634c724
add gnomad_cnv_r4 to search dataset
Oct 6, 2023
26f85b6
add gnomad_cnv_r4 to metadata
Oct 6, 2023
f8d54b8
create cnv populations table
Oct 6, 2023
bdd1fa1
add cnv page to variant page router
Oct 6, 2023
094ad47
WIP cnv page
Oct 6, 2023
5d72c96
WIP cnv attribute list
Oct 6, 2023
d3d2e61
add cnv coverage track for percent callable
Oct 12, 2023
8cef11d
fix datasetselector oraganization for cnvs
Oct 13, 2023
66875e4
add variantfeedback spec tests
Oct 13, 2023
13fbc27
create cnv reference list
Oct 13, 2023
548e0d4
add v4 and cnv v4 to metadata
Oct 13, 2023
4b2a345
add CNV info to gene page display
Oct 13, 2023
390ca74
update cnv pop table labels
Oct 13, 2023
9e89be3
WIP variant cnv page
Oct 13, 2023
62139f1
create cnv types ts
Oct 13, 2023
287f00a
update attribute list
Oct 13, 2023
c111e15
add filter zoom region for cnvs
Oct 13, 2023
e618553
update graphql types
Oct 13, 2023
abcf5a9
create tests
Oct 18, 2023
6ccf5e6
create cnv factories
Oct 18, 2023
a091f0d
add exome only coverage for cnvs
Oct 19, 2023
d28db68
add param to only display exome coverage for cnvs
Oct 19, 2023
eaa2939
add cnv type
Oct 19, 2023
999689d
add format prettier
Oct 23, 2023
db258fe
draft track callable coverage
Oct 25, 2023
9446351
add cnv coverage bin type
Oct 25, 2023
f2376ea
update metadata and sample counts
Oct 26, 2023
1092789
add final graphql edits
Oct 26, 2023
9fb2d64
fix pipeline edits
Oct 26, 2023
fa08958
Final Gene and Region Page edits for CNV
Oct 26, 2023
a603ced
eslint pass
Oct 26, 2023
b1fabcd
remove inital coverage files
Oct 26, 2023
004ba1e
coverage edits
Oct 26, 2023
84fea62
Add snapshot test updates
Oct 27, 2023
4dc9495
add page changes
Oct 29, 2023
2b16f07
add formatting
Oct 29, 2023
f709675
update dataset selection
Oct 29, 2023
9aa35bc
remove console.log
Oct 29, 2023
407263b
finalize testing files
Oct 29, 2023
aa51e93
add new vcf file path
Oct 29, 2023
6b5a687
add chromosome to variant table position
Oct 29, 2023
c4180e2
fix variant table broke search
Oct 29, 2023
dfff177
eslint fix
Oct 29, 2023
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add cnvs to region type
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Elissa Alarmani committed Oct 29, 2023
commit a1f257aa0d1904e55f2b57446d8cea2ea0721699
1 change: 1 addition & 0 deletions graphql-api/src/graphql/types/region.graphql
Original file line number Diff line number Diff line change
@@ -31,6 +31,7 @@ type Region {
variants(dataset: DatasetId!): [Variant!]! @cost(value: 10)
structural_variants(dataset: StructuralVariantDatasetId!): [StructuralVariant!]! @cost(value: 10)
mitochondrial_variants(dataset: DatasetId!): [MitochondrialVariant!]! @cost(value: 10)
copy_number_variants(dataset: CopyNumberVariantDatasetId ): [CopyNumberVariant!]! @cost(value: 10) #TODO: MAKE REQUIRED DATASETID

clinvar_variants: [ClinVarVariant!] @cost(value: 10)