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Merge pull request #579 from broadinstitute/mw/change_region_flag_padding_release
calling region flag padding 50 -> 0 in release HT
2 parents cdc3dd5 + 06c3dc3 commit 2dbf6c8

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Diff for: gnomad_qc/v4/create_release/create_release_sites_ht.py

+4-4
Original file line numberDiff line numberDiff line change
@@ -409,13 +409,13 @@ def custom_region_flags_select(
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.ht()[ht.locus]
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.pass_interval_qc,
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outside_ukb_capture_region=~hl.is_defined(
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calling_intervals(
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interval_name="ukb", calling_interval_padding=50
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).ht()[ht.locus]
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calling_intervals(interval_name="ukb", calling_interval_padding=0).ht()[
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ht.locus
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]
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),
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outside_broad_capture_region=~hl.is_defined(
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calling_intervals(
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interval_name="broad", calling_interval_padding=50
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interval_name="broad", calling_interval_padding=0
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).ht()[ht.locus]
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),
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)

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