From 3f9614d7e8fc39f7f1b7f0d4abb5f0a1e2fd6eee Mon Sep 17 00:00:00 2001 From: Shantanu Singh Date: Thu, 2 Jun 2022 22:38:18 -0400 Subject: [PATCH] Move data to cellpainting-gallery --- README.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/README.md b/README.md index 4cdd221..cbb5500 100644 --- a/README.md +++ b/README.md @@ -100,19 +100,19 @@ Alternatively used example data from DP Github. ## Experimental data on S3 - Compressed LINCS images: -`s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/2016_04_01_a549_48hr_batch1_compressed/images/` -- Backup large csv files: `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/location_backups/` -- Location files: `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/deep_learning/inputs/locations/` -- LINCS sub index: `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/deep_learning/inputs/metadata/sub_index.csv` -- full enriched index: `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/deep_learning/inputs/metadata/enriched_index.csv` -- logs of experiments: `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/deep_learning/logs/` -- models: `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/deep_learning/models/` -- LINCS subsets crop (18 million): `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/deep_learning/crops/` +`s3://cellpainting-gallery/cpg0004-lincs/broad/2016_04_01_a549_48hr_batch1_compressed/images/` +- Backup large csv files: `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/location_backups/` +- Location files: `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/deep_learning/inputs/locations/` +- LINCS sub index: `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/deep_learning/inputs/metadata/sub_index.csv` +- full enriched index: `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/deep_learning/inputs/metadata/enriched_index.csv` +- logs of experiments: `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/deep_learning/logs/` +- models: `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/deep_learning/models/` +- LINCS subsets crop (18 million): `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/deep_learning/crops/` ## Important random things - Some information in this repository may be old since the DeepProfiler versions changed midway through the project -- The single cell crops of all 18 million cells within the LINCS subsection can be found on S3: `s3://jump-cellpainting/projects/2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad/workspace/deep_learning/outputs/1017_sc/` +- The single cell crops of all 18 million cells within the LINCS subsection can be found on S3: `s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/deep_learning/outputs/1017_sc/` - If you can't reach Michael Bornholdt, try to reach Shantanu Singh.