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fix unruly URL issues #36

fix unruly URL issues

fix unruly URL issues #36

Workflow file for this run

on:
push:
branches: [main, devel]
pull_request:
branches: [devel]
name: Build-Check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: macOS-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
# - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} # bioconductor not ready
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
_R_CHECK_CRAN_INCOMING_REMOTE_: false
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-tinytex@v2
- run: |
tlmgr --version
tlmgr install colortbl
tlmgr install parskip
tlmgr install ae
tlmgr install upquote
- name: Install Bioconductor dependencies
run: |
# need to install some pkgs from Bioconductor
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MassSpecWavelet")
BiocManager::install("impute")
BiocManager::install("mixOmics")
shell: Rscript {0}
- name: Install other dependencies
run: |
install.packages("remotes") # needed here!
install.packages("roxygen2")
install.packages("rcmdcheck") # apparently assumed by check-r-package below
remotes::install_deps(dependencies = TRUE) # all others
shell: Rscript {0}
- name: Roxygenize
run: |
roxygen2::roxygenize()
shell: Rscript {0}
- name: Build and Check
# env:
# _R_CHECK_CRAN_INCOMING_REMOTE_: false
uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true