fix unruly URL issues #37
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| on: | |
| push: | |
| branches: [main, devel] | |
| pull_request: | |
| branches: [devel] | |
| name: Build-Check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| # - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} # bioconductor not ready | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - run: | | |
| tlmgr --version | |
| tlmgr install colortbl | |
| tlmgr install parskip | |
| tlmgr install ae | |
| tlmgr install upquote | |
| - name: Install Bioconductor dependencies | |
| run: | | |
| # need to install some pkgs from Bioconductor | |
| if (!requireNamespace("BiocManager", quietly = TRUE)) | |
| install.packages("BiocManager") | |
| BiocManager::install("MassSpecWavelet") | |
| BiocManager::install("impute") | |
| BiocManager::install("mixOmics") | |
| shell: Rscript {0} | |
| - name: Install other dependencies | |
| run: | | |
| install.packages("remotes") # needed here! | |
| install.packages("roxygen2") | |
| install.packages("rcmdcheck") # apparently assumed by check-r-package below | |
| remotes::install_deps(dependencies = TRUE) # all others | |
| shell: Rscript {0} | |
| - name: Roxygenize | |
| run: | | |
| roxygen2::roxygenize() | |
| shell: Rscript {0} | |
| - name: Build and Check | |
| # env: | |
| # _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true |