v0.3.2: Fix checkpoint cache dir bug

Changed

• Fix checkpoint cache dir bug

Full Changelog: v0.3.1...v0.3.2

v0.3.1: Add msa search and tojson features

Changed

• Support msa search and tojson
• Fix the problem that the same chain number comes from different entity_id in pdb_to_cif
• Add plddt to the output CIF file in the form of Bfactor

Full Changelog: v0.3.0...v0.3.1

v0.3.0: Update License to Apache 2.0 license (commercial use)

Changed

• Update License to Apache 2.0 license (commercial use)
• Support msa search and mutiple seed for command line inference
• Fix download dir for user do not have root permission in Inference

Full Changelog: v0.2.0...v0.3.0

v0.2.0: Fix plddt and update model weight

Changes

• Retrain Confidence head and fix plddt range
• The model weight is updated

Full Changelog: v0.1.0...v0.2.0

v0.1.0: Protenix Initial Version

What's Changed

• update readme by @zhangyuxuann in #14
• Fix: layer_norm.py unnecessary writes by @alexzhang13 in #15
• Fixed cmd to test docker GPU by @jaketanderson in #17
• Compatibility issues with string types in input JSON by @cloverzizi in #19
• unify letter cases of keys used in frontend by @Kqiii in #20
• remove layernorm chunk code which will make train/inference slow down by @yangyanpinghpc in #22
• Include seed in final name by @hypnopump in #34

New Contributors

• @zhangyuxuann made their first contribution in #14
• @alexzhang13 made their first contribution in #15
• @jaketanderson made their first contribution in #17
• @cloverzizi made their first contribution in #19
• @Kqiii made their first contribution in #20
• @yangyanpinghpc made their first contribution in #22
• @hypnopump made their first contribution in #34

Full Changelog: https://github.com/bytedance/Protenix/commits/v0.1.0