java.net.SocketException: Connection reset #53
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Could you send me your PepQuery command line? |
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Dear PepQuery2 developers,
When I put the command in the background, I get the following error:
java.net.SocketTimeoutException: Read timed out
at java.base/java.net.SocketInputStream.socketRead0(Native Method)
at java.base/java.net.SocketInputStream.socketRead(SocketInputStream.java:115)
at java.base/java.net.SocketInputStream.read(SocketInputStream.java:168)
at java.base/java.net.SocketInputStream.read(SocketInputStream.java:140)
at java.base/sun.security.ssl.SSLSocketInputRecord.read(SSLSocketInputRecord.java:478)
at java.base/sun.security.ssl.SSLSocketInputRecord.readFully(SSLSocketInputRecord.java:461)
at java.base/sun.security.ssl.SSLSocketInputRecord.decodeInputRecord(SSLSocketInputRecord.java:243)
at java.base/sun.security.ssl.SSLSocketInputRecord.decode(SSLSocketInputRecord.java:181)
at java.base/sun.security.ssl.SSLTransport.decode(SSLTransport.java:111)
at java.base/sun.security.ssl.SSLSocketImpl.decode(SSLSocketImpl.java:1386)
at java.base/sun.security.ssl.SSLSocketImpl.readApplicationRecord(SSLSocketImpl.java:1355)
at java.base/sun.security.ssl.SSLSocketImpl$AppInputStream.read(SSLSocketImpl.java:977)
at org.apache.http.impl.io.SessionInputBufferImpl.streamRead(SessionInputBufferImpl.java:137)
at org.apache.http.impl.io.SessionInputBufferImpl.fillBuffer(SessionInputBufferImpl.java:153)
at org.apache.http.impl.io.SessionInputBufferImpl.read(SessionInputBufferImpl.java:205)
at org.apache.http.impl.io.ContentLengthInputStream.read(ContentLengthInputStream.java:176)
at org.apache.http.conn.EofSensorInputStream.read(EofSensorInputStream.java:135)
at com.amazonaws.internal.SdkFilterInputStream.read(SdkFilterInputStream.java:90)
at com.amazonaws.event.ProgressInputStream.read(ProgressInputStream.java:180)
at com.amazonaws.internal.SdkFilterInputStream.read(SdkFilterInputStream.java:90)
at com.amazonaws.internal.SdkFilterInputStream.read(SdkFilterInputStream.java:90)
at com.amazonaws.internal.SdkFilterInputStream.read(SdkFilterInputStream.java:90)
at com.amazonaws.event.ProgressInputStream.read(ProgressInputStream.java:180)
at java.base/java.security.DigestInputStream.read(DigestInputStream.java:162)
at com.amazonaws.services.s3.internal.DigestValidationInputStream.read(DigestValidationInputStream.java:59)
at com.amazonaws.internal.SdkFilterInputStream.read(SdkFilterInputStream.java:90)
at com.amazonaws.services.s3.internal.S3AbortableInputStream.read(S3AbortableInputStream.java:125)
at com.amazonaws.internal.SdkFilterInputStream.read(SdkFilterInputStream.java:90)
at java.base/java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:243)
at java.base/java.util.zip.InflaterInputStream.read(InflaterInputStream.java:159)
at java.base/java.util.zip.GZIPInputStream.read(GZIPInputStream.java:118)
at java.base/sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
at java.base/sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
at java.base/sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
at java.base/java.io.InputStreamReader.read(InputStreamReader.java:181)
at java.base/java.io.BufferedReader.fill(BufferedReader.java:161)
at java.base/java.io.BufferedReader.readLine(BufferedReader.java:326)
at java.base/java.io.BufferedReader.readLine(BufferedReader.java:392)
at main.java.pg.S3Interface.downloadGZip(S3Interface.java:115)
at main.java.pg.S3Interface.download(S3Interface.java:84)
at main.java.msio.IndexFileDownloadWorker.download(IndexFileDownloadWorker.java:34)
at main.java.msio.IndexFileDownloadWorker.run(IndexFileDownloadWorker.java:23)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Exception in thread "pool-3-thread-15" com.amazonaws.SdkClientException: Unable to execute HTTP request: The target server failed to respond
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.handleRetryableException(AmazonHttpClient.java:1219)
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1165)
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.doExecute(AmazonHttpClient.java:814)
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeWithTimer(AmazonHttpClient.java:781)
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.execute(AmazonHttpClient.java:755)
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.access$500(AmazonHttpClient.java:715)
at com.amazonaws.http.AmazonHttpClient$RequestExecutionBuilderImpl.execute(AmazonHttpClient.java:697)
at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:561)
at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:541)
at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5456)
at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5403)
at com.amazonaws.services.s3.AmazonS3Client.getObjectMetadata(AmazonS3Client.java:1372)
at com.amazonaws.services.s3.AmazonS3Client.getObjectMetadata(AmazonS3Client.java:1346)
at com.amazonaws.services.s3.AmazonS3Client.doesObjectExist(AmazonS3Client.java:1427)
at main.java.pg.S3Interface.download(S3Interface.java:54)
at main.java.msio.IndexFileDownloadWorker.download(IndexFileDownloadWorker.java:34)
at main.java.msio.IndexFileDownloadWorker.run(IndexFileDownloadWorker.java:23)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: org.apache.http.NoHttpResponseException: The target server failed to respond
at org.apache.http.impl.conn.DefaultHttpResponseParser.parseHead(DefaultHttpResponseParser.java:141)
at org.apache.http.impl.conn.DefaultHttpResponseParser.parseHead(DefaultHttpResponseParser.java:56)
at org.apache.http.impl.io.AbstractMessageParser.parse(AbstractMessageParser.java:259)
at org.apache.http.impl.DefaultBHttpClientConnection.receiveResponseHeader(DefaultBHttpClientConnection.java:163)
at org.apache.http.impl.conn.CPoolProxy.receiveResponseHeader(CPoolProxy.java:157)
at org.apache.http.protocol.HttpRequestExecutor.doReceiveResponse(HttpRequestExecutor.java:273)
at com.amazonaws.http.protocol.SdkHttpRequestExecutor.doReceiveResponse(SdkHttpRequestExecutor.java:82)
at org.apache.http.protocol.HttpRequestExecutor.execute(HttpRequestExecutor.java:125)
at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:272)
at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:186)
at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:185)
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:83)
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:56)
at com.amazonaws.http.apache.client.impl.SdkHttpClient.execute(SdkHttpClient.java:72)
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeOneRequest(AmazonHttpClient.java:1346)
at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1157)
... 18 more
nohup1.log
Is this caused by the Internet? How should this problem be solved?
Thanks for your help!
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