Complementary Finder and MSn deconvolution processing nodes for Thermo Proteome Discoverer 2.x.
The node is expected to be compatible with all versions of Proteome Discoverer startting from 2.0 and higher. It was tested on Proteome Discoverer 2.0.0.802, 2.1.0.81, and 2.1.1.21. Earlier versions of Proteome Discoverer (for example 1.4) are not compatible with the node.
Use Download ZIP button on the main page to download all necessary files (download of individual DLL might be blocked by the security policy) and follow the instructions in Installation.pdf
The devoloped nodes were used in SuperQuant workflow. Details could be found in the following article:
Vladimir Gorshkov, Thiago Verano-Braga, and Frank Kjeldsen "SuperQuant: a Data Processing Approach to Increase Quantitative Proteome Coverage", Analytical Chemistry, 2015, 87(12): 6319-6327
DOI: 10.1021/acs.analchem.5b01166
PMID: 25978296
Source code is available in src folder is published under LGPL 3.0 license
Please cite the publication above when distributing/modifing the code.
The code depends on proprietary libraries that are the part of the Thermo Proteome Discoverer and can be compiled only if the latter is installed in the system.
The project is mantained by Vladimir Gorshkov (vgоr @ bmb.sdu.dk).