DESCRIPTION

Package: PISCES
Title: Protein Activity Inferecne in Single Cells
Version: 0.0.0.9000
Authors@R: 
    person(given = "Lukas",
           family = "Vlahos",
           role = c("aut", "cre"),
           email = "lv2395@cumc.columbia.edu",
           comment = c(ORCID = "0000-0002-4083-6924"))
Description: PISCES is the Califano lab pipeline for single-cell RNAseq analysis. It leverages the ARACNe-3 and NaRnEA algorithms to infer regulatory networks and protein activity, with clustering, plotting, and master regulator identification functionality. PISCES can work off of either a Seurat object or in a more independent manner.
License: What license it uses
Encoding: UTF-8
LazyData: false
Imports:
  abind,
  biomaRt,
  circlize,
  ComplexHeatmap,
  cluster,
  densvis,
  ggplot2,
  ggpubr,
  ggrepel,
  grDevices,
  Matrix,
  RColorBrewer,
  RSpectra,
  Seurat,
  stringr,
  uwot
RoxygenNote: 7.2.0
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr
Depends: 
    R (>= 3.0)