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Copy pathjackson-2020-markers-v4.yml
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jackson-2020-markers-v4.yml
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cell_states:
HALLMARK_TNFA_SIGNALING_VIA_NFKB:
- CD44
- c-Myc
HALLMARK_APOPTOSIS:
- CD44
- Cytokeratin 8/18
- Her2
- cleaved PARP
- Cleaved Caspase3
HALLMARK_ESTROGEN_RESPONSE_LATE:
- CD44
- E-Cadherin
- Cytokeratin 19
- Progesterone Receptor A/B antibody 1
- Progesterone Receptor A/B antibody 2
HALLMARK_PROTEIN_SECRETION:
- Cytokeratin 8/18
- EGFR
HALLMARK_APICAL_JUNCTION:
- CD31
- E-Cadherin
- EGFR
- CD45
HALLMARK_COMPLEMENT:
- GATA3
- Fibronectin
HALLMARK_E2F_TARGETS:
- c-Myc
- p53
- Ki-67
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION:
- CD44
- SMA
- Vimentin
- Fibronectin
- Slug
HALLMARK_GLYCOLYSIS:
- CD44
- EGFR
HALLMARK_UV_RESPONSE_DN:
- c-Myc
- Her2
- Slug
HALLMARK_COAGULATION:
- CD31
- Fibronectin
HALLMARK_ALLOGRAFT_REJECTION:
- EGFR
- CD3
- CD45
mTOR_signalling:
- phospho mTOR
- phospho S6
cell_types:
Stromal:
- Vimentin
- Fibronectin
- SMA
B cells:
- CD45
- CD20
# - Vimentin
T cells:
- CD45
- CD3
# - Vimentin
Epithelial (basal):
- E-Cadherin
- pan Cytokeratin
- Cytokeratin 5
- Cytokeratin 14
Epithelial (other):
- E-Cadherin
- pan Cytokeratin
Epithelial (luminal):
- E-Cadherin
- pan Cytokeratin
- Cytokeratin 7
- Cytokeratin 8/18
- Cytokeratin 19
Macrophage:
- CD45
- CD68
# - Vimentin
Endothelial:
- vWF
- Vimentin