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does it work for tapestri data ? #2

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reJELIN opened this issue Mar 10, 2023 · 1 comment

reJELIN commented Mar 10, 2023

Hello,

i saw you're already have a pipeline for preprocessing single-cell DNA-seq. I was wondering if it would work for tapestri data ?

Thanks you in advanced for your answer.

Member

NBMueller commented Jun 2, 2023

Hey,

The pipeline in this repo was designed for WES/WGS data, I therefore do not recommend using it for Tapestri data.
Mission Bio has its own pipeline (https://support.missionbio.com/hc/en-us/articles/360055980994-Tapestri-Pipeline-User-Guide), specially tailored for the Tapestri platform. For example, it directly checks for low-performing amplicons.

Hope that helps, although a little late

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