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.travis.yml
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.travis.yml
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language: python
python:
- "3.5"
install:
- sudo apt-get update
- if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
else
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
fi
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
- conda config --add channels r
- conda config --add channels bioconda
- conda config --add channels conda-forge
- conda info -a
- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
- source activate test-environment
- conda clean --lock
- conda install -q --yes gcc
- conda install -q --yes --file=conda_package_list.txt
- pip install --no-cache-dir -r pypi_package_list.txt
script:
# run scikit-allel test suite to verify dependencies are good
- export PYTHONHASHSEED=42
- nosetests allel --exclude=from_gff3