From aaa02e769d4c488a239fc3d1f679bece69464ff8 Mon Sep 17 00:00:00 2001 From: bkmartinjr Date: Sat, 16 Dec 2023 12:27:36 -0800 Subject: [PATCH] clean up debug code --- .github/workflows/py-full-unittests.yml | 16 ++-------------- 1 file changed, 2 insertions(+), 14 deletions(-) diff --git a/.github/workflows/py-full-unittests.yml b/.github/workflows/py-full-unittests.yml index e3513ad0c..a5ad91d8a 100644 --- a/.github/workflows/py-full-unittests.yml +++ b/.github/workflows/py-full-unittests.yml @@ -22,22 +22,9 @@ jobs: with: python-version: 3.11 - - name: debugging - run: | - pwd - printenv - ls -la - ls -la api/python/cellxgene_census/ - git status - git describe - git tag - - name: Install python dependencies (including experimental) run: | python -m pip install -U pip setuptools setuptools_scm wheel - # debugging - python -m setuptools_scm -c ./api/python/cellxgene_census/pyproject.toml - pip install --use-pep517 accumulation-tree # Geneformer dependency needs --use-pep517 for Cython pip install -r ./api/python/cellxgene_census/scripts/requirements-dev.txt pip install './api/python/cellxgene_census/[experimental]' @@ -45,7 +32,8 @@ jobs: - name: Log debugging info run: | python -c 'import tiledbsoma; tiledbsoma.show_package_versions()' + pip freeze - name: Pytest (--expensive --experimental) run: | - PYTHONPATH=. pytest -v --durations=0 -rP --experimental --expensive ./api/python/cellxgene_census/tests/ -k test_incremental_read_obs + PYTHONPATH=. pytest -v --durations=0 -rP --experimental --expensive ./api/python/cellxgene_census/tests/