{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":1591413,"defaultBranch":"master","name":"cloudbiolinux","ownerLogin":"chapmanb","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2011-04-09T13:09:58.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/39391?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1679436612.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"297dca21271fc431324f2d87b0526da2e7fa14b9","ref":"refs/heads/dependabot/pip/deploy/paramiko-3.4.0","pushedAt":"2023-12-19T20:46:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump paramiko from 2.10.1 to 3.4.0 in /deploy\n\nBumps [paramiko](https://github.com/paramiko/paramiko) from 2.10.1 to 3.4.0.\n- [Commits](https://github.com/paramiko/paramiko/compare/2.10.1...3.4.0)\n\n---\nupdated-dependencies:\n- dependency-name: paramiko\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump paramiko from 2.10.1 to 3.4.0 in /deploy"}},{"before":"acc587744df4c8d15f41049118cf01cc3ace7be2","after":"cd1b727402e20f3b2c98a9bd116724ebdde83181","ref":"refs/heads/master","pushedAt":"2023-12-11T06:06:54.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update miRBase download URLs (#413)\n\n* Update mirbase.org URLs fixes https://github.com/bcbio/bcbio-nextgen/issues/3721 fixes https://github.com/bcbio/bcbio-nextgen/issues/3722\r\n\r\n* Some miRBase downloads no longer require uncompressing. Fixes https://github.com/bcbio/bcbio-nextgen/issues/3723\r\n\r\n---------\r\n\r\nCo-authored-by: Rob Chekaluk ","shortMessageHtmlLink":"Update miRBase download URLs (#413)"}},{"before":"39eb5ac3d45654404d703ffb450a67947458df37","after":"acc587744df4c8d15f41049118cf01cc3ace7be2","ref":"refs/heads/master","pushedAt":"2023-10-26T18:41:59.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Bump GRCh37 dbnsp to build 156 (#412)\n\n* Bump dbnsp version GRCh37 only (fixes https://github.com/bcbio/bcbio-nextgen/issues/3714)\r\n\r\n* Bump dbnsp version hg38 only\r\n\r\n---------\r\n\r\nCo-authored-by: Rob Chekaluk ","shortMessageHtmlLink":"Bump GRCh37 dbnsp to build 156 (#412)"}},{"before":"a727f0c06924fef49334a5a0e610b36979f4bc12","after":"39eb5ac3d45654404d703ffb450a67947458df37","ref":"refs/heads/master","pushedAt":"2023-03-27T04:37:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update gnomad.yaml","shortMessageHtmlLink":"Update gnomad.yaml"}},{"before":"9b176b2fd864cd2cc0d17663524a998b883e0ab2","after":"a727f0c06924fef49334a5a0e610b36979f4bc12","ref":"refs/heads/master","pushedAt":"2023-03-26T05:18:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update gnomad.yaml\n\nchanges in the gnomad fields\r\nsome _ changed to -\r\nNo more non-Finnish south Europeans, Bulgarians, Other non-Finnish (onf)\r\nNo nore Swedish, Norwegians, Japanese, Korean, Other east Asians\r\nsubpopulations","shortMessageHtmlLink":"Update gnomad.yaml"}},{"before":"14e7c35034c9bac37f4e5eecb25a96bf341244a4","after":"9b176b2fd864cd2cc0d17663524a998b883e0ab2","ref":"refs/heads/master","pushedAt":"2023-03-21T22:10:35.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update packages-conda.yaml (#410)","shortMessageHtmlLink":"Update packages-conda.yaml (#410)"}},{"before":null,"after":"fe06629689331070273b3da23706f0105d2e2bd4","ref":"refs/heads/tmp_pin_fastqc_0.11.9","pushedAt":"2023-03-21T22:10:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update packages-conda.yaml","shortMessageHtmlLink":"Update packages-conda.yaml"}},{"before":"2fbf53cc42f4c17e69840df0e0677c545d9cebf0","after":"14e7c35034c9bac37f4e5eecb25a96bf341244a4","ref":"refs/heads/master","pushedAt":"2023-03-20T16:26:07.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update packages-conda.yaml (#409)","shortMessageHtmlLink":"Update packages-conda.yaml (#409)"}},{"before":null,"after":"c6367214679a8e6b6616e5bea3a67cfbf8bea11c","ref":"refs/heads/java_remove_gridss_hmftools","pushedAt":"2023-03-20T16:25:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update packages-conda.yaml","shortMessageHtmlLink":"Update packages-conda.yaml"}},{"before":"bc92cdc2009f6611aecfae689a5f8f6a78e184c4","after":"2fbf53cc42f4c17e69840df0e0677c545d9cebf0","ref":"refs/heads/master","pushedAt":"2023-03-20T16:18:26.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update packages-conda.yaml (#408)","shortMessageHtmlLink":"Update packages-conda.yaml (#408)"}},{"before":null,"after":"379ef1616a400f8b9be801a25b37841387839ace","ref":"refs/heads/java_env_pre_java17","pushedAt":"2023-03-20T16:18:13.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update packages-conda.yaml","shortMessageHtmlLink":"Update packages-conda.yaml"}},{"before":"7753ce9852f8d2f1f225187e14a5c9405d2a5b4f","after":"bc92cdc2009f6611aecfae689a5f8f6a78e184c4","ref":"refs/heads/master","pushedAt":"2023-03-20T15:42:35.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update dbsnp.yaml (#407)","shortMessageHtmlLink":"Update dbsnp.yaml (#407)"}},{"before":null,"after":"faea7bfb02ea2dc7cfe15b93447e1ea5cab7e006","ref":"refs/heads/fix_dbsnp_156_hg38","pushedAt":"2023-03-20T15:42:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update dbsnp.yaml","shortMessageHtmlLink":"Update dbsnp.yaml"}},{"before":"796932d210fe59977cbc45c7a8ede996afdc334b","after":"7753ce9852f8d2f1f225187e14a5c9405d2a5b4f","ref":"refs/heads/master","pushedAt":"2023-03-20T15:41:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update dbsnp.yaml (#406)","shortMessageHtmlLink":"Update dbsnp.yaml (#406)"}},{"before":null,"after":"7a0034898021e89969f3cfa3cf968225ddaaf42d","ref":"refs/heads/patch_hg19_dbsnp_156","pushedAt":"2023-03-20T15:41:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update dbsnp.yaml","shortMessageHtmlLink":"Update dbsnp.yaml"}},{"before":"2e65f8f854ac43c78a5ff09ca4b98f28d1fb22de","after":"796932d210fe59977cbc45c7a8ede996afdc334b","ref":"refs/heads/master","pushedAt":"2023-03-20T06:30:58.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update dbsnp.yaml (#405)","shortMessageHtmlLink":"Update dbsnp.yaml (#405)"}},{"before":null,"after":"ea5e3fa9ee21cb6629d26614c40e4e073ca90634","ref":"refs/heads/update_dbsnp","pushedAt":"2023-03-20T06:30:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"naumenko-sa","name":"Serhiy Naumenko","path":"/naumenko-sa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13981803?s=80&v=4"},"commit":{"message":"Update dbsnp.yaml","shortMessageHtmlLink":"Update dbsnp.yaml"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADzin9ZgA","startCursor":null,"endCursor":null}},"title":"Activity ยท chapmanb/cloudbiolinux"}