diff --git a/DataCore/manifest.mf b/DataCore/manifest.mf index 697bd74..a6c9f93 100644 --- a/DataCore/manifest.mf +++ b/DataCore/manifest.mf @@ -2,5 +2,5 @@ Manifest-Version: 1.0 AutoUpdate-Show-In-Client: true OpenIDE-Module: umich.ms.batmass.data.core OpenIDE-Module-Localizing-Bundle: umich/ms/batmass/data/core/Bundle.properties -OpenIDE-Module-Specification-Version: 1.1.2 +OpenIDE-Module-Specification-Version: 1.1.3 diff --git a/DataCore/nbproject/genfiles.properties b/DataCore/nbproject/genfiles.properties index eb3b229..f699e38 100644 --- a/DataCore/nbproject/genfiles.properties +++ b/DataCore/nbproject/genfiles.properties @@ -1,8 +1,8 @@ -build.xml.data.CRC32=64c99fd5 +build.xml.data.CRC32=864162db build.xml.script.CRC32=7c68088a build.xml.stylesheet.CRC32=a56c6a5b@2.71.1 # This file is used by a NetBeans-based IDE to track changes in generated files such as build-impl.xml. # Do not edit this file. You may delete it but then the IDE will never regenerate such files for you. -nbproject/build-impl.xml.data.CRC32=64c99fd5 +nbproject/build-impl.xml.data.CRC32=864162db nbproject/build-impl.xml.script.CRC32=f439f271 nbproject/build-impl.xml.stylesheet.CRC32=238281d1@2.71.1 diff --git a/DataCore/nbproject/project.xml b/DataCore/nbproject/project.xml index 442eef5..af1c6af 100644 --- a/DataCore/nbproject/project.xml +++ b/DataCore/nbproject/project.xml @@ -32,11 +32,11 @@ - umich.ms.batmass.libs.guava180 + umich.ms.batmass.libs.guava - 18.0 + 22.0 @@ -60,7 +60,7 @@ - 0.7.9991 + 0.8.0.1 @@ -68,7 +68,7 @@ - 1.1.7 + 1.2.10 @@ -76,7 +76,7 @@ - 0.7.9.10 + 0.8.0.7 @@ -92,7 +92,7 @@ - 1.0 + 1.3 diff --git a/FileSupport/manifest.mf b/FileSupport/manifest.mf index 0567ec5..f3a59b0 100644 --- a/FileSupport/manifest.mf +++ b/FileSupport/manifest.mf @@ -3,5 +3,5 @@ OpenIDE-Module: umich.ms.batmass.filesupport OpenIDE-Module-Install: umich/ms/batmass/filesupport/Installer.class OpenIDE-Module-Layer: umich/ms/batmass/filesupport/layer.xml OpenIDE-Module-Localizing-Bundle: umich/ms/batmass/filesupport/Bundle.properties -OpenIDE-Module-Specification-Version: 1.1.1.3 +OpenIDE-Module-Specification-Version: 1.1.1.4 diff --git a/FileSupport/nbproject/genfiles.properties b/FileSupport/nbproject/genfiles.properties index 9642305..a94d458 100644 --- a/FileSupport/nbproject/genfiles.properties +++ b/FileSupport/nbproject/genfiles.properties @@ -1,5 +1,5 @@ # This file is used by a NetBeans-based IDE to track changes in generated files such as build-impl.xml. # Do not edit this file. You may delete it but then the IDE will never regenerate such files for you. -nbproject/build-impl.xml.data.CRC32=8c54ef2d +nbproject/build-impl.xml.data.CRC32=3b37b87d nbproject/build-impl.xml.script.CRC32=7789e09b nbproject/build-impl.xml.stylesheet.CRC32=238281d1@2.71.1 diff --git a/FileSupport/nbproject/project.xml b/FileSupport/nbproject/project.xml index ca294e5..f718699 100644 --- a/FileSupport/nbproject/project.xml +++ b/FileSupport/nbproject/project.xml @@ -242,11 +242,11 @@ - umich.ms.batmass.libs.guava180 + umich.ms.batmass.libs.guava - 18.0 + 22.0 @@ -270,15 +270,13 @@ - 0.7.9991 + 0.8.0.1 umich.ms.batmass.libs.rxjava - - - 1.1.7 + 1.2.10 @@ -286,7 +284,7 @@ - 0.7.9.10 + 0.8.0.7 diff --git a/GUI/manifest.mf b/GUI/manifest.mf index 4aa3d1c..b87c672 100644 --- a/GUI/manifest.mf +++ b/GUI/manifest.mf @@ -3,5 +3,5 @@ AutoUpdate-Show-In-Client: true OpenIDE-Module: umich.ms.batmass.gui OpenIDE-Module-Layer: umich/ms/batmass/gui/layer.xml OpenIDE-Module-Localizing-Bundle: umich/ms/batmass/gui/Bundle.properties -OpenIDE-Module-Specification-Version: 1.1.8.5 +OpenIDE-Module-Specification-Version: 1.1.8.6 diff --git a/GUI/nbproject/genfiles.properties b/GUI/nbproject/genfiles.properties index a7db94e..31148bf 100644 --- a/GUI/nbproject/genfiles.properties +++ b/GUI/nbproject/genfiles.properties @@ -1,8 +1,8 @@ -build.xml.data.CRC32=5b69ce85 +build.xml.data.CRC32=e448aae1 build.xml.script.CRC32=561f1472 build.xml.stylesheet.CRC32=a56c6a5b@2.71.1 # This file is used by a NetBeans-based IDE to track changes in generated files such as build-impl.xml. # Do not edit this file. You may delete it but then the IDE will never regenerate such files for you. -nbproject/build-impl.xml.data.CRC32=5b69ce85 +nbproject/build-impl.xml.data.CRC32=e448aae1 nbproject/build-impl.xml.script.CRC32=c12ad135 nbproject/build-impl.xml.stylesheet.CRC32=238281d1@2.71.1 diff --git a/GUI/nbproject/project.xml b/GUI/nbproject/project.xml index fea3c46..f3f8813 100644 --- a/GUI/nbproject/project.xml +++ b/GUI/nbproject/project.xml @@ -243,11 +243,11 @@ - umich.ms.batmass.libs.guava180 + umich.ms.batmass.libs.guava - 18.0 + 22.0 @@ -287,15 +287,13 @@ - 0.7.9991 + 0.8.0.1 umich.ms.batmass.libs.rxjava - - - 1.1.7 + 1.2.10 @@ -303,7 +301,7 @@ - 0.7.9.10 + 0.8.0.7 diff --git a/GUI/src/umich/ms/batmass/gui/viewers/map2d/components/Map2DPanel.java b/GUI/src/umich/ms/batmass/gui/viewers/map2d/components/Map2DPanel.java index 600dbb7..f5fb676 100644 --- a/GUI/src/umich/ms/batmass/gui/viewers/map2d/components/Map2DPanel.java +++ b/GUI/src/umich/ms/batmass/gui/viewers/map2d/components/Map2DPanel.java @@ -18,8 +18,6 @@ import umich.ms.batmass.gui.viewers.map2d.norm.RangeNormalizer; import com.github.davidmoten.rtree.Entry; import com.github.davidmoten.rtree.RTree; -import com.github.davidmoten.rtree.geometry.Geometries; -import com.github.davidmoten.rtree.geometry.Geometry; import java.awt.AlphaComposite; import java.awt.Color; import java.awt.Container; @@ -38,13 +36,11 @@ import java.awt.event.MouseWheelEvent; import java.awt.geom.Rectangle2D; import java.awt.image.BufferedImage; -import java.util.Iterator; import java.util.LinkedList; import java.util.List; import java.util.Map; import java.util.NavigableMap; import java.util.TreeMap; -import java.util.concurrent.atomic.AtomicInteger; import javax.swing.JPanel; import javax.swing.JToolTip; import javax.swing.SwingUtilities; @@ -52,11 +48,8 @@ import javax.swing.event.EventListenerList; import net.engio.mbassy.bus.MBassador; import net.engio.mbassy.listener.Handler; -import rx.Observable; -import rx.functions.Action1; import umich.ms.batmass.data.core.lcms.features.Features; import umich.ms.batmass.data.core.lcms.features.ILCMSFeature2D; -import umich.ms.batmass.data.core.lcms.features.api.FeatureUtils; import umich.ms.batmass.gui.core.api.comm.eventbus.AbstractBusPubSub; import umich.ms.batmass.gui.core.api.data.MzRtPoint; import umich.ms.batmass.gui.core.api.data.MzRtRegion; @@ -69,7 +62,6 @@ import umich.ms.batmass.gui.viewers.map2d.messages.MsgZoom1D; import umich.ms.batmass.gui.viewers.map2d.messages.MsgZoom2D; import umich.ms.batmass.nbputils.OutputWndPrinter; -import umich.ms.datatypes.LCMSDataSubset; import umich.ms.datatypes.scan.IScan; import umich.ms.datatypes.scan.props.PrecursorInfo; import umich.ms.datatypes.scancollection.IScanCollection; diff --git a/NbpUtils/manifest.mf b/NbpUtils/manifest.mf index 1e2df20..d5e24b6 100644 --- a/NbpUtils/manifest.mf +++ b/NbpUtils/manifest.mf @@ -1,5 +1,5 @@ Manifest-Version: 1.0 OpenIDE-Module: umich.ms.batmass.nbputils OpenIDE-Module-Localizing-Bundle: umich/ms/batmass/nbputils/Bundle.properties -OpenIDE-Module-Specification-Version: 1.1.1 +OpenIDE-Module-Specification-Version: 1.1.2 diff --git a/NbpUtils/nbproject/genfiles.properties b/NbpUtils/nbproject/genfiles.properties index 6d47905..b990b59 100644 --- a/NbpUtils/nbproject/genfiles.properties +++ b/NbpUtils/nbproject/genfiles.properties @@ -1,5 +1,5 @@ # This file is used by a NetBeans-based IDE to track changes in generated files such as build-impl.xml. # Do not edit this file. You may delete it but then the IDE will never regenerate such files for you. -nbproject/build-impl.xml.data.CRC32=b70e695d +nbproject/build-impl.xml.data.CRC32=47d76819 nbproject/build-impl.xml.script.CRC32=87917fb0 nbproject/build-impl.xml.stylesheet.CRC32=238281d1@2.71.1 diff --git a/NbpUtils/nbproject/project.xml b/NbpUtils/nbproject/project.xml index ae333dc..8080908 100644 --- a/NbpUtils/nbproject/project.xml +++ b/NbpUtils/nbproject/project.xml @@ -120,11 +120,11 @@ - umich.ms.batmass.libs.guava180 + umich.ms.batmass.libs.guava - 18.0 + 22.0