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Python API Overview

Loading an ONNX Model

import onnx

# onnx_model is an in-memory ModelProto
onnx_model = onnx.load('path/to/the/model.onnx')

Runnable IPython notebooks:

Loading an ONNX Model with External Data

  • [Default] If the external data is under the same directory of the model, simply use onnx.load()
import onnx

onnx_model = onnx.load('path/to/the/model.onnx')
  • If the external data is under another directory, use load_external_data_for_model() to specify the directory path and load after using onnx.load()
import onnx
from onnx.external_data_helper import load_external_data_for_model

onnx_model = onnx.load('path/to/the/model.onnx', load_external_data=False)
load_external_data_for_model(onnx_model, 'data/directory/path/')
# Then the onnx_model has loaded the external data from the specific directory

Converting an ONNX Model to External Data

from onnx.external_data_helper import convert_model_to_external_data

# onnx_model is an in-memory ModelProto
onnx_model = ...
convert_model_to_external_data(onnx_model, all_tensors_to_one_file=True, location='filename', size_threshold=1024, convert_attribute=False)
# Then the onnx_model has converted raw data as external data
# Must be followed by save

Saving an ONNX Model

import onnx

# onnx_model is an in-memory ModelProto
onnx_model = ...

# Save the ONNX model
onnx.save(onnx_model, 'path/to/the/model.onnx')

Runnable IPython notebooks:

Converting and Saving an ONNX Model to External Data

import onnx

# onnx_model is an in-memory ModelProto
onnx_model = ...
onnx.save_model(onnx_model, 'path/to/save/the/model.onnx', save_as_external_data=True, all_tensors_to_one_file=True, location='filename', size_threshold=1024, convert_attribute=False)
# Then the onnx_model has converted raw data as external data and saved to specific directory

Manipulating TensorProto and Numpy Array

import numpy
import onnx
from onnx import numpy_helper

# Preprocessing: create a Numpy array
numpy_array = numpy.array([[1.0, 2.0, 3.0], [4.0, 5.0, 6.0]], dtype=float)
print('Original Numpy array:\n{}\n'.format(numpy_array))

# Convert the Numpy array to a TensorProto
tensor = numpy_helper.from_array(numpy_array)
print('TensorProto:\n{}'.format(tensor))

# Convert the TensorProto to a Numpy array
new_array = numpy_helper.to_array(tensor)
print('After round trip, Numpy array:\n{}\n'.format(new_array))

# Save the TensorProto
with open('tensor.pb', 'wb') as f:
    f.write(tensor.SerializeToString())

# Load a TensorProto
new_tensor = onnx.TensorProto()
with open('tensor.pb', 'rb') as f:
    new_tensor.ParseFromString(f.read())
print('After saving and loading, new TensorProto:\n{}'.format(new_tensor))

Runnable IPython notebooks:

Creating an ONNX Model Using Helper Functions

import onnx
from onnx import helper
from onnx import AttributeProto, TensorProto, GraphProto


# The protobuf definition can be found here:
# https://github.com/onnx/onnx/blob/main/onnx/onnx.proto


# Create one input (ValueInfoProto)
X = helper.make_tensor_value_info('X', TensorProto.FLOAT, [3, 2])
pads = helper.make_tensor_value_info('pads', TensorProto.FLOAT, [1, 4])

value = helper.make_tensor_value_info('value', AttributeProto.FLOAT, [1])


# Create one output (ValueInfoProto)
Y = helper.make_tensor_value_info('Y', TensorProto.FLOAT, [3, 4])

# Create a node (NodeProto) - This is based on Pad-11
node_def = helper.make_node(
    'Pad',                  # name
    ['X', 'pads', 'value'], # inputs
    ['Y'],                  # outputs
    mode='constant',        # attributes
)

# Create the graph (GraphProto)
graph_def = helper.make_graph(
    [node_def],        # nodes
    'test-model',      # name
    [X, pads, value],  # inputs
    [Y],               # outputs
)

# Create the model (ModelProto)
model_def = helper.make_model(graph_def, producer_name='onnx-example')

print('The model is:\n{}'.format(model_def))
onnx.checker.check_model(model_def)
print('The model is checked!')

Runnable IPython notebooks:

Checking an ONNX Model

import onnx

# Preprocessing: load the ONNX model
model_path = 'path/to/the/model.onnx'
onnx_model = onnx.load(model_path)

print('The model is:\n{}'.format(onnx_model))

# Check the model
try:
    onnx.checker.check_model(onnx_model)
except onnx.checker.ValidationError as e:
    print('The model is invalid: %s' % e)
else:
    print('The model is valid!')

Runnable IPython notebooks:

Checking a Large ONNX Model >2GB

Current checker supports checking models with external data, but for those models larger than 2GB, please use the model path for onnx.checker and the external data needs to be under the same directory.

import onnx

onnx.checker.check_model('path/to/the/model.onnx')
# onnx.checker.check_model(loaded_onnx_model) will fail if given >2GB model

Running Shape Inference on an ONNX Model

import onnx
from onnx import helper, shape_inference
from onnx import TensorProto


# Preprocessing: create a model with two nodes, Y's shape is unknown
node1 = helper.make_node('Transpose', ['X'], ['Y'], perm=[1, 0, 2])
node2 = helper.make_node('Transpose', ['Y'], ['Z'], perm=[1, 0, 2])

graph = helper.make_graph(
    [node1, node2],
    'two-transposes',
    [helper.make_tensor_value_info('X', TensorProto.FLOAT, (2, 3, 4))],
    [helper.make_tensor_value_info('Z', TensorProto.FLOAT, (2, 3, 4))],
)

original_model = helper.make_model(graph, producer_name='onnx-examples')

# Check the model and print Y's shape information
onnx.checker.check_model(original_model)
print('Before shape inference, the shape info of Y is:\n{}'.format(original_model.graph.value_info))

# Apply shape inference on the model
inferred_model = shape_inference.infer_shapes(original_model)

# Check the model and print Y's shape information
onnx.checker.check_model(inferred_model)
print('After shape inference, the shape info of Y is:\n{}'.format(inferred_model.graph.value_info))

Runnable IPython notebooks:

Shape inference a Large ONNX Model >2GB

Current shape_inference supports models with external data, but for those models larger than 2GB, please use the model path for onnx.shape_inference.infer_shapes_path and the external data needs to be under the same directory. You can specify the output path for saving the inferred model; otherwise, the default output path is same as the original model path.

import onnx

# output the inferred model to the original model path
onnx.shape_inference.infer_shapes_path('path/to/the/model.onnx')

# output the inferred model to the specified model path
onnx.shape_inference.infer_shapes_path('path/to/the/model.onnx', 'output/inferred/model.onnx')

# inferred_model = onnx.shape_inference.infer_shapes(loaded_onnx_model) will fail if given >2GB model

Converting Version of an ONNX Model within Default Domain (""/"ai.onnx")

import onnx
from onnx import version_converter, helper

# Preprocessing: load the model to be converted.
model_path = 'path/to/the/model.onnx'
original_model = onnx.load(model_path)

print('The model before conversion:\n{}'.format(original_model))

# A full list of supported adapters can be found here:
# https://github.com/onnx/onnx/blob/main/onnx/version_converter.py#L21
# Apply the version conversion on the original model
converted_model = version_converter.convert_version(original_model, <int target_version>)

print('The model after conversion:\n{}'.format(converted_model))

Utility Functions

Extracting Sub-model with Inputs Outputs Tensor Names

Function extract_model() extracts sub-model from an ONNX model. The sub-model is defined by the names of the input and output tensors exactly.

import onnx

input_path = 'path/to/the/original/model.onnx'
output_path = 'path/to/save/the/extracted/model.onnx'
input_names = ['input_0', 'input_1', 'input_2']
output_names = ['output_0', 'output_1']

onnx.utils.extract_model(input_path, output_path, input_names, output_names)

Note: For control-flow operators, e.g. If and Loop, the boundary of sub-model, which is defined by the input and output tensors, should not cut through the subgraph that is connected to the main graph as attributes of these operators.

ONNX Compose

onnx.compose module provides tools to create combined models.

onnx.compose.merge_models can be used to merge two models, by connecting some of the outputs from the first model with inputs from the second model. By default, inputs/outputs not present in the io_map argument will remain as inputs/outputs of the combined model.

In this example we merge two models by connecting each output of the first model to an output in the second. The resulting model will have the same inputs as the first model and the same outputs as the second:

import onnx

model1 = onnx.load('path/to/model1.onnx')
# agraph (float[N] A, float[N] B) => (float[N] C, float[N] D)
#   {
#      C = Add(A, B)
#      D = Sub(A, B)
#   }

model2 = onnx.load('path/to/model2.onnx')
#   agraph (float[N] X, float[N] Y) => (float[N] Z)
#   {
#      Z = Mul(X, Y)
#   }

combined_model = onnx.compose.merge_models(
    model1, model2,
    io_map=[('C', 'X'), ('D', 'Y')]
)

Additionally, a user can specify a list of inputs/outputs to be included in the combined model, effectively dropping the part of the graph that doesn't contribute to the combined model outputs. In the following example, we are connecting only one of the two outputs in the first model to both inputs in the second. By specifying the outputs of the combined model explicitly, we are dropping the output not consumed from the first model, and the relevant part of the graph:

import onnx

# Default case. Include all outputs in the combined model
combined_model = onnx.compose.merge_models(
    model1, model2,
    io_map=[('C', 'X'), ('C', 'Y')],
)  # outputs: 'D', 'Z'

# Explicit outputs. 'Y' output and the Sub node are not present in the combined model
combined_model = onnx.compose.merge_models(
    model1, model2,
    io_map=[('C', 'X'), ('C', 'Y')],
    outputs=['Z'],
)  # outputs: 'Z'

onnx.compose.add_prefix allows you to add a prefix to names in the model, to avoid a name collision when merging them. By default, it renames all names in the graph: inputs, outputs, edges, nodes, initializers, sparse initializers and value infos.

import onnx

model = onnx.load('path/to/the/model.onnx')
# model - outputs: ['out0', 'out1'], inputs: ['in0', 'in1']

new_model = onnx.compose.add_prefix(model, prefix='m1/')
# new_model - outputs: ['m1/out0', 'm1/out1'], inputs: ['m1/in0', 'm1/in1']

# Can also be run in-place
onnx.compose.add_prefix(model, prefix='m1/', inplace=True)

onnx.compose.expand_out_dim can be used to connect models that expect a different number of dimensions by inserting dimensions with extent one. This can be useful, when combining a model producing samples with a model that works with batches of samples.

import onnx

# outputs: 'out0', shape=[200, 200, 3]
model1 = onnx.load('path/to/the/model1.onnx')

# outputs: 'in0', shape=[N, 200, 200, 3]
model2 = onnx.load('path/to/the/model2.onnx')

# outputs: 'out0', shape=[1, 200, 200, 3]
new_model1 = onnx.compose.expand_out_dims(model1, dim_idx=0)

# Models can now be merged
combined_model = onnx.compose.merge_models(
    new_model1, model2, io_map=[('out0', 'in0')]
)

# Can also be run in-place
onnx.compose.expand_out_dims(model1, dim_idx=0, inplace=True)

Tools

Updating Model's Inputs Outputs Dimension Sizes with Variable Length

Function update_inputs_outputs_dims updates the dimension of the inputs and outputs of the model, to the provided values in the parameter. You could provide both static and dynamic dimension size, by using dim_param. For more information on static and dynamic dimension size, checkout Tensor Shapes.

The function runs model checker after the input/output sizes are updated.

import onnx
from onnx.tools import update_model_dims

model = onnx.load('path/to/the/model.onnx')
# Here both 'seq', 'batch' and -1 are dynamic using dim_param.
variable_length_model = update_model_dims.update_inputs_outputs_dims(model, {'input_name': ['seq', 'batch', 3, -1]}, {'output_name': ['seq', 'batch', 1, -1]})

ONNX Parser

Functions onnx.parser.parse_model and onnx.parser.parse_graph can be used to create an ONNX model or graph from a textual representation as shown below. See Language Syntax for more details about the language syntax.

input = '''
   agraph (float[N, 128] X, float[128, 10] W, float[10] B) => (float[N, 10] C)
   {
        T = MatMul(X, W)
        S = Add(T, B)
        C = Softmax(S)
   }
'''
graph = onnx.parser.parse_graph(input)

input = '''
   <
     ir_version: 7,
     opset_import: ["" : 10]
   >
   agraph (float[N, 128] X, float[128, 10] W, float[10] B) => (float[N, 10] C)
   {
      T = MatMul(X, W)
      S = Add(T, B)
      C = Softmax(S)
   }
'''
model = onnx.parser.parse_model(input)