From 11a991ea6643c91a416518f872d7d178e2f7dcd9 Mon Sep 17 00:00:00 2001 From: Augustin Zidek Date: Thu, 23 Jan 2025 04:40:13 -0800 Subject: [PATCH] Bump Python in Colab to 3.11. PiperOrigin-RevId: 718812632 Change-Id: I54b901e7a361a63a2c3f366535dbe2cd3e792b99 --- notebooks/AlphaFold.ipynb | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/notebooks/AlphaFold.ipynb b/notebooks/AlphaFold.ipynb index 97f07428..b9226d98 100644 --- a/notebooks/AlphaFold.ipynb +++ b/notebooks/AlphaFold.ipynb @@ -111,7 +111,7 @@ " %env PATH=/opt/conda/bin:{PATH}\n", " %shell conda install -qy conda==24.11.1 \\\n", " \u0026\u0026 conda install -qy -c conda-forge \\\n", - " python=3.10 \\\n", + " python=3.11 \\\n", " openmm=8.0.0 \\\n", " pdbfixer\n", " pbar.update(80)\n", @@ -166,8 +166,8 @@ " # Make sure stereo_chemical_props.txt is in all locations where it could be searched for.\n", " %shell mkdir -p /content/alphafold/alphafold/common\n", " %shell cp -f /content/stereo_chemical_props.txt /content/alphafold/alphafold/common\n", - " %shell mkdir -p /opt/conda/lib/python3.10/site-packages/alphafold/common/\n", - " %shell cp -f /content/stereo_chemical_props.txt /opt/conda/lib/python3.10/site-packages/alphafold/common/\n", + " %shell mkdir -p /opt/conda/lib/python3.11/site-packages/alphafold/common/\n", + " %shell cp -f /content/stereo_chemical_props.txt /opt/conda/lib/python3.11/site-packages/alphafold/common/\n", "\n", " # Load parameters\n", " %shell mkdir --parents \"{PARAMS_DIR}\"\n", @@ -192,7 +192,7 @@ "\n", "# Make sure everything we need is on the path.\n", "import sys\n", - "sys.path.append('/opt/conda/lib/python3.10/site-packages')\n", + "sys.path.append('/opt/conda/lib/python3.11/site-packages')\n", "sys.path.append('/content/alphafold')\n", "\n", "executed_cells.add(2)"