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mkdocs.yml
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mkdocs.yml
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site_name: phylojs
site_url: https://clockor2.github.io/phylojs/
repo_url: https://github.com/clockor2/phylojs
edit_uri: https://github.com/clockor2/phylojs/edit/main/docs/
theme:
name: "material"
palette:
- scheme: default
toggle:
icon: material/brightness-7
name: Switch to dark mode
- scheme: slate
toggle:
icon: material/brightness-4
name: Switch to light mode
logo: images/logo.png
favicon: images/logo-pink.png
features:
- toc.follow
- content.action.edit
- content.code.copy
- navigation.tabs
- navigation.indexes
- navigation.top
- content.action.edit
- content.action.view
- navigation.tracking
- navigation.tabs
- navigation.expand
markdown_extensions:
- admonition
- pymdownx.details
- pymdownx.superfences
- attr_list
plugins:
- search
- mkdocs-video:
is_video: True
video_muted: True
video_controls: True
css_style:
width: "100%"
- typedoc:
source: "./src/"
tsconfig: "tsconfig.json"
name: "API"
options: "typedoc.json"
disable_system_check: False
nav:
- Home:
- "index.md"
- Overview of the Tree Class: tree.md
- Overview of the Node Class: node.md
- Reading Trees: reader.md
- Writing Trees: writer.md
- Examples:
- examples/index.md
- Random-Rerooting App: examples/rerootingApp.md
- Ladderising App: examples/ladderiseApp.md
- Newick Conversion App: examples/toNewickApp.md
- Tree Statistics App: examples/treeStatsApp.md
- Annotations and Pre-Order Traversal: examples/annotationsPreOrder.md
- Fetching Trees from a URL: examples/fetch.md
- Root-to-tip regression: examples/rttr.md
- Pruning and Grafting: examples/pruneGraft.md
- Extracting Clades: examples/mrca.md
- Modifying Annotations: examples/annotations.md
- Arrays of Trees: examples/treeArray.md
- API: "typedoc"
- Cite: cite.md