job_script_SLURM

#!/bin/bash

##SLURM Example for Darwin in Cambridge (adapted from STG perl script)

#SBATCH -p sandybridge
#SBATCH -A PLANCK
#SBATCH --nodes=##NUMNODES##
#SBATCH --ntasks=##NUMTASKS##
#SBATCH --time=##WALLTIME##
#SBATCH --mail-type=FAIL

cd ##ROOTDIR##

. /etc/profile.d/modules.sh
module purge
module load default-impi

#cfitsio is only needed for WMAP
module load cfitsio

#for PICO runs also need python (check path also set correctly)
#not needed otherwise
module load python/2.7.3

echo Running on host `hostname`
echo Time is `date`
echo Directory is `pwd`
echo Slurm job ID is $SLURM_JOBID
echo This jobs runs on the following machines:
export NODEFILE=`generate_pbs_nodefile`
echo `cat $NODEFILE | uniq`

cat $NODEFILE | uniq > scripts/machine.file.$SLURM_JOBID

export OMP_NUM_THREADS=##OMP##
export I_MPI_PIN=##ONERUN##
export I_MPI_PIN_DOMAIN=omp:compact
export I_MPI_PIN_ORDER=scatter
export I_MPI_CPUINFO=proc

###set things to be used by the python script, which extracts text from here with ##XX: ... ##
### command to use for each run in the batch
##RUN: time mpirun --ppn ##MPIPERNODE## -np ##NUMMPI## ##PROGRAM## ##INI## > ./scripts/##INIBASE##.log 2>&1 ##
### defaults for this script
##DEFAULT_qsub: qsub ##

##COMMAND##

#wait for processes to finish
wait