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Pin both seurat and seuratobject versions #159

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SGMartin opened this issue Apr 29, 2024 · 1 comment
Open

Pin both seurat and seuratobject versions #159

SGMartin opened this issue Apr 29, 2024 · 1 comment
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@SGMartin
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SGMartin commented Apr 29, 2024

Some people are having issues due to them installing the correct Seurat version (v4) but pulling (I guess from conda) SeuratObject v5. This works with seurat due to compat. options but makes beyondcell fail when calculating the bcScore.

This should be fixed by either:

  • Pinning both Seurat and SeuratObject versions in the beyondcell recipe.
  • Upgrading Beyondcell to fully support v5 objects.
@SGMartin SGMartin added the bug Something isn't working label Apr 29, 2024
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So after digging in the conda recipe I've found that the issue lies specifically with the noarch compilation, which is mostly pulled by Windows based installation. AFAIK, linux and macOS are compiled as standalone versions, so that's why we could not reproduce it on our end.

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