Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

How to speed up, this tool is very slow to use . My configuration is HF 2.5HZ 108 cores, 186G RAM, still very slow! #167

Open
JinchaoChen112 opened this issue Dec 17, 2024 · 1 comment
Open

How to speed up, this tool is very slow to use . My configuration is HF 2.5HZ 108 cores, 186G RAM, still very slow! #167

JinchaoChen112 opened this issue Dec 17, 2024 · 1 comment

Comments

@JinchaoChen112
Copy link

1cdb2720f03d1bd13ac8da3be09965f

How to speed up, this tool is very slow to use . My configuration is HF 2.5HZ 108 cores, 186G RAM, still very slow!
@LiuCanidk
Copy link

LiuCanidk commented Dec 27, 2024 •
edited
Loading

I recommend trying metacell construction, using SEACell or SuperCell or some other tools. And then you would get only hundreds or thousands of cell, which can be easily run on a laptop and extremely fast (1000 cell, ~1min). Metacell processing should not bias any biological conclusion on the cell cluster level, which is the interest of most downstream analysis.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@LiuCanidk @JinchaoChen112