Installation documentation not complete

[ndehio]

According to my student William Attie, the following commands were missing when installing cosima last week on a fresh ubuntu 16.04:
sudo apt-get install libffi-dev libeigen3-dev libxml-xpath-perl libyaml-cpp-dev libtinyxml-dev omniorb-idl omniorb-nameserver python-protobuf python-gi liblog4cpp5-dev
sudo apt-get install python-pip
sudo pip install --upgrade pip
sudo pip install sphinx-bootstrap-theme python-hwinfo prettytable argparse

And these git repositories failed with error 128
cd $HOME/citk/dist
git clone --quiet --branch 0.4 https://github.com/corlab/urdfdom.git /tmp/project.aaEfDV/branch-0.4/
git clone --quiet --branch 0.14 https://code.cor-lab.de/git/rsb.git.protocol /tmp/project.sHTr55/branch-0.14/
git clone --quiet --branch master https://github.com/cogimon/rtt-gazebo-robot-sim.git /tmp/project.KIYBmF/branch-master/
git clone --quiet --branch toolchain-2.8 https://github.com/orocos-toolchain/rtt.git /tmp/project.YMmFA2/branch-toolchain-2.8/
git clone --quiet --branch toolchain-2.8 https://github.com/orocos-toolchain/log4cpp.git /tmp/project.agBikk/branch-toolchain-2.8/
git clone --quiet --branch master https://github.com/corlab/rtt-gazebo-clock-plugin.git /tmp/project.QD0OQv/branch-master/
git clone --quiet --branch indigo-devel https://github.com/corlab/rtt_geometry /tmp/project.QMs1I3/branch-indigo-devel/
git clone --quiet --branch indigo-devel https://github.com/corlab/robot_model /tmp/project.MRRBLD/branch-indigo-devel/
git clone --quiet --branch indigo-devel https://github.com/corlab/robot_model /tmp/project.Arxcqh/branch-indigo-devel/