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Is your feature request related to a problem? Please describe.
One important step in ldpred2 is the LD-score regression. Currently, the output of this is not tested.
Describe the solution you'd like
Reorganize ldpred2.R so that this step is easy to test by moving code into the fun.R script so that it can be run separately. It's probably best to add this as part of testing the results of the tutorial in usecases/LDpred2_test/unittests/tutorial.R. Might aswell add a command-line interface to bigsnpr::snp_ldsc while at it.
Describe alternatives you've considered
None
Additional context
None
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
One important step in ldpred2 is the LD-score regression. Currently, the output of this is not tested.
containers/usecases/LDpred2/ldpred2.R
Lines 248 to 251 in c36ae83
Describe the solution you'd like
Reorganize
ldpred2.R
so that this step is easy to test by moving code into thefun.R
script so that it can be run separately. It's probably best to add this as part of testing the results of the tutorial inusecases/LDpred2_test/unittests/tutorial.R
. Might aswell add a command-line interface tobigsnpr::snp_ldsc
while at it.Describe alternatives you've considered
None
Additional context
None
The text was updated successfully, but these errors were encountered: