Option to get marker, effect allele and beta in the output

[Mahantesh-Biradar]

Hi team, I would like to know if there is an option to create a file with marker, alleles and beta columns rather than PRS in the LDPred2 standalone version?

Thank you

[github-actions]

Hello @Mahantesh-Biradar , thank you for submitting an issue!

[espenhgn]

Hi @Mahantesh-Biradar,
This is not something we presently store as the main script output is the PRS for each individual.
However, it looks fairly straightforward to store the different output of the call to snp_ldpred2_auto function around here, if you are willing to give it a try.

[Mahantesh-Biradar]

Thanks @espenhgn , let me try this option.

[github-actions]

This issue appears to be stale due to non-activity