Package LDpred2 scripts

[deepchocolate]

Is your feature request related to a problem? Please describe.
The ldpred2 scripts works as is, but it's not optimal in terms of distribution and development.

Describe the solution you'd like
More code can be moved into usecases/LDpred2/fun.R and create an R-package based on this. The R scripts in usecases/LDpred2/ would then be interfaces to this R-package.

• Easier development as there is a good library for package development in R (devtools).
• This would simplify use of these scripts independently of the containers.
• Dependencies can be loaded through the R-package, rather than this obscure workaround to resolve script paths:

  containers/usecases/LDpred2/ldpred2.R

  Lines 11 to 14 in eea44e4

  	coms <- commandArgs()
  	coms <- coms[substr(coms, 1, 7) == '--file=']
  	dirScript <- dirname(substr(coms, 8, nchar(coms)))
  	source(paste0(dirScript, '/fun.R'))

[deepchocolate]

The most important thing: Any package name suggestion? Maybe something like "ldpred2Commander" (in reference to being a command-line interface to ldpred2)... @espenhgn

[espenhgn]

Hi @deepchocolate - I have no strong opinion on naming this package!

[github-actions]

This issue appears to be stale due to non-activity