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gwas.py: Include BOLT-LMM in pipeline #95

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espenhgn opened this issue Nov 22, 2022 · 1 comment
Open

gwas.py: Include BOLT-LMM in pipeline #95

espenhgn opened this issue Nov 22, 2022 · 1 comment
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enhancement New feature or request no-issue-activity

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espenhgn commented Nov 22, 2022 •
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Is your feature request related to a problem? Please describe.
BOLT-LMM is included in gwas.sif and can be used by calling the corresponding binary (singularity exec --home=$PWD:/home $SIF/gwas.sif bolt --help), but there are no options to use it via the gwas.py script.

Describe the solution you'd like
Added support for BOLT-LMM in gwas.sif conforming to the standard keyword argument pattern of input/output files and parameters, and a use case demoing this functionality.
@espenhgn espenhgn added the enhancement New feature or request label Nov 22, 2022
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This issue appears to be stale due to non-activity

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