DESCRIPTION

Package: CellFunTopic
Title: Cell-Type Inference and Functional Annotation for Single-Cell Transcriptomics Using Functional Signatures
Version: 0.0.0.9000
Authors@R: 
    person(given = "Shanni",
           family = "Cao",
           role = c("aut", "cre"),
           email = "xiaobaicainiao@163.com")
Maintainer: Shanni Cao <xiaobaicainiao@163.com>
Description: CellFunTopic enables rapid, automated, effective cell type annotation transfer across scRNA-seq datasets and species. 
    In addition, CellFunTopic provides a variety of meaningful visualization methods for functional annotation of single-cell transcriptomics.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Imports:
    Seurat,
    clusterProfiler,
    dplyr,
    foreach,
    AnnotationDbi,
    AnnotationHub,
    RColorBrewer,
    biomaRt,
    ggplot2,
    igraph,
    ggraph,
    tidygraph,
    topicmodels,
    tidytext,
    GO.db,
    magrittr,
    modeltools,
    circlize,
    plyr,
    DOSE,
    cowplot,
    echarts4r,
    networkD3,
    scatterpie,
    widyr,
    ggwordcloud,
    caret,
    data.table,
    factoextra,
    ggnewscale,
    ggpubr,
    ggrepel,
    pals,
    pheatmap,
    philentropy,
    reshape2,
    scales,
    stringr,
    tibble,
    tidyr,
    uwot,
    purrr,
    stats,
    utils,
    graphics,
    grDevices
Suggests:
    msigdbr,
    ReactomePA,
    simplifyEnrichment,
    ComplexHeatmap,
    GOfuncR,
    Matrix,
    wordcloud2,
    shiny,
    htmlwidgets,
    BiocManager,
    proxy,
    rWikiPathways,
    knitr,
    rmarkdown
Depends: 
    R (>= 2.10)
VignetteBuilder: knitr
URL: https://github.com/compbioNJU/CellFunTopic
BugReports: https://github.com/compbioNJU/CellFunTopic/issues