diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 40d0793..f307f1f 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -209,14 +209,14 @@ jobs: continue-on-error: true shell: Rscript {0} - - name: Install dependencies pass 2 - run: | - ## Pass #2 at installing dependencies - ## This pass does not use AnVIL and will thus update any packages - ## that have seen been updated in Bioconductor - message(paste('****', Sys.time(), 'pass number 2 at installing dependencies: any remaining dependencies ****')) - remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, force = TRUE) - shell: Rscript {0} + # - name: Install dependencies pass 2 + # run: | + # ## Pass #2 at installing dependencies + # ## This pass does not use AnVIL and will thus update any packages + # ## that have seen been updated in Bioconductor + # message(paste('****', Sys.time(), 'pass number 2 at installing dependencies: any remaining dependencies ****')) + # remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, force = TRUE) + # shell: Rscript {0} - name: Install BiocGenerics if: env.has_RUnit == 'true'