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VcfToBedpe tool help

VcfToBedpe (2023_03-63-gec44de43)

Converts a VCF file containing structural variants to BEDPE format.

Input can be MANTA oder DELLY VCF files.

Mandatory parameters:
  -in <file>   Input structural variant list in VCF format.
  -out <file>  Output structural variant list in BEDPE format.

Optional parameters:
  -no_sort     Do not sort results
               Default value: 'false'

Special parameters:
  --help       Shows this help and exits.
  --version    Prints version and exits.
  --changelog  Prints changeloge and exits.
  --tdx        Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

VcfToBedpe changelog

VcfToBedpe 2023_03-63-gec44de43

2023-03-23 Added support for Sniffles, cuteSV and dipdiff

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