diff --git a/lineage_notes.txt b/lineage_notes.txt index 63f642d7..f6fd3eb3 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1104,8 +1104,12 @@ JN.1.7.3 Alias of B.1.1.529.2.86.1.1.7.3, S:R346T, from sars-cov-2-variants/line JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C) JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y LK.1 Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada +LK.2 Alias of B.1.1.529.2.86.1.1.7.5.2, S:R346T +LK.2.1 Alias of B.1.1.529.2.86.1.1.7.5.2.1, S:S455A, S:T547K, Central America JN.1.7.6 Alias of B.1.1.529.2.86.1.1.7.6, S:S60P, ORF1a:P1609S, Wales JN.1.7.7 Alias of B.1.1.529.2.86.1.1.7.7, ORF1b:K2557R +JN.1.7.8 Alias of B.1.1.529.2.86.1.1.7.8, S:F456L (22930A), S:185-189del, N:365L, Central America +JN.1.7.9 Alias of B.1.1.529.2.86.1.1.7.9, G347A, C1057T, C7834T, S:F456L (22930A) JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 JN.1.8.2 Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G, from sars-cov-2-variants/lineage-proposals#1089 @@ -1121,16 +1125,24 @@ LB.1.2 Alias of B.1.1.529.2.86.1.1.9.2.1.2, ORF1b:G2068R LB.1.2.1 Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T LB.1.3 Alias of B.1.1.529.2.86.1.1.9.2.1.3, ORF1b:T1555I LB.1.3.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I +LB.1.3.2 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2, C25413T +MH.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I LB.1.4 Alias of B.1.1.529.2.86.1.1.9.2.1.4, ORF1a:A1473V +LB.1.4.1 Alias of B.1.1.529.2.86.1.1.9.2.1.4.1, S:R190S LB.1.5 Alias of B.1.1.529.2.86.1.1.9.2.1.5, S:L1143F, ORF1b:T1621I, Asia，from sars-cov-2-variants/lineage-proposals#1557 LB.1.6 Alias of B.1.1.529.2.86.1.1.9.2.1.6, S:I670M, England/Canada LB.1.7 Alias of B.1.1.529.2.86.1.1.9.2.1.7, ORF1a:L1507F, G21123T +LB.1.7.1 Alias of B.1.1.529.2.86.1.1.9.2.1.7.1, S:N148T, USA-NY +LB.1.7.2 Alias of B.1.1.529.2.86.1.1.9.2.1.7.2, S:S680P +LB.1.7.3 Alias of B.1.1.529.2.86.1.1.9.2.1.7.3, S:R34C +LB.1.8 Alias of B.1.1.529.2.86.1.1.9.2.1.8, ORF1a:I785V JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135 JN.1.11 Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446 JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253 KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364 KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N, after ORF1b:L2213F, from #2510 +MG.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del LP.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I,from sars-cov-2-variants/lineage-proposals#1591 @@ -1161,6 +1173,7 @@ KP.2.13 Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, C9565T, C24553T, KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:G184V, S:S31F KP.2.15 Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:31del, USA/Canada KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S +KP.2.17 Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore KP.3 Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E, from sars-cov-2-variants/lineage-proposals#1410 KP.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1, G15372T, A19722G KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain @@ -1168,7 +1181,12 @@ MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I KP.3.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.2, S:S151I，from sars-cov-2-variants/lineage-proposals#1589 KP.3.1.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.3, S:S31F,from sars-cov-2-variants/lineage-proposals#1576 KP.3.1.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4, ORF1b:P1675S,from #2627 +MM.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.1, S:S680P, Europe +MM.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.2, S:G35R, S:N185D KP.3.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I186V, England +KP.3.1.6 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6, T19305C +MK.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.1, S:S31F, UK +MK.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.2, S:D745G, after E:L21F KP.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2, A2611C, C22858T KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore KP.3.2.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2.2, S:W258R @@ -1178,25 +1196,35 @@ KP.3.2.4 Alias of B.1.1.529.2.86.1.1.11.1.3.2.4, ORF3a:L73F KP.3.2.5 Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P KP.3.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.1, S:T547K, ORF3a:F87S +KP.3.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.2, S:A435S, ORF1a:N4134T, England/Canada +KP.3.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3, G9424T, Japan/Canada +ML.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.1, S:681H +ML.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.2, S:Q677H, USA +KP.3.4 Alias of B.1.1.529.2.86.1.1.11.1.3.4, ORF3a:L73F, C25521T, Asia +KP.3.4.1 Alias of B.1.1.529.2.86.1.1.11.1.3.4.1, S:S31F, N:A134V, ORF1a:E1192K +KP.3.5 Alias of B.1.1.529.2.86.1.1.11.1.3.5, S:G213E, most with C1420T, America KP.4 Alias of B.1.1.529.2.86.1.1.11.1.4, C6070T, India KP.4.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T -KP.4.1.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India +KP.4.1.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India from #2521 KP.4.1.2 Alias of B.1.1.529.2.86.1.1.11.1.4.1.2, S:L441V KP.4.1.3 Alias of B.1.1.529.2.86.1.1.11.1.4.1.3, ORF1a:M598V, A5245G, S:31del KP.4.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R KP.4.2.1 Alias of B.1.1.529.2.86.1.1.11.1.4.2.1, S:S31F KP.4.2.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2.2, S:F59I +KP.4.2.3 Alias of B.1.1.529.2.86.1.1.11.1.4.2.3, S:G35R, ORF1a:G519S, ORF1a:I2227V KP.5 Alias of B.1.1.529.2.86.1.1.11.1.5, S:T572I JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253 JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464 JN.1.13.1 Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386 KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 -KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, C19716T, Singapore/Taiwan/Canada +KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, Singapore/Taiwan/Canada KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.2, S:T678I, Russia +KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.3, S:V642A, Dominican Republic JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador -LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T +LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T +LU.2 Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 LF.1 Alias of B.1.1.529.2.86.1.1.16.1.1, ORF1a:A1268T, ORF1a:S2103F @@ -1208,6 +1236,7 @@ LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P，from sars-cov-2-variants/l LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO LF.4 Alias of B.1.1.529.2.86.1.1.16.1.4, N:R385K, ORF1a:T4368I LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29* +LF.5 Alias of B.1.1.529.2.86.1.1.16.1.5, S:T33A, S:N185D, C28660T JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I @@ -1220,8 +1249,8 @@ LQ.1.1 Alias of B.1.1.529.2.86.1.1.18.1.1.1, S:P272H,from #2596 LQ.2 Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China,from sars-cov-2-variants/lineage-proposals#1414 LQ.3 Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441 -LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V -LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S +LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V from #2654 +LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S from #2654 JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G) MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana from #2567 @@ -1231,8 +1260,9 @@ JN.1.18.5 Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A) LS.1 Alias of B.1.1.529.2.86.1.1.18.5.1, S:Y28H, S:L189A, S:184-188del, ORF1a:E940D JN.1.18.6 Alias of B.1.1.529.2.86.1.1.18.6, S:F456L (T22928C), S:F59S from #2623 LY.1 Alias of B.1.1.529.2.86.1.1.18.6.1, S:F65Y, S:Q183P from #2623 -LY.2 Alias of B.1.1.529.2.86.1.1.18.6.2, S:Q183H, C2143T -JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:F59S, S:D1260Y from #2623 +LY.2 Alias of B.1.1.529.2.86.1.1.18.6.2, S:Q183H, C2143T +JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:T22N, S:F59S, S:D1260Y from #2623 +MN.1 Alias of B.1.1.529.2.86.1.1.18.7.1, S:D80Y, S:P174S, S:S689N, England/Wales JN.1.19 Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V JN.1.20 Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162 @@ -1255,6 +1285,7 @@ LG.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1.1, S:R346T, Australia KW.1.2 Alias of B.1.1.529.2.86.1.1.28.1.1.2, S:K529T, Australia JN.1.29 Alias of B.1.1.529.2.86.1.1.29, ORF1a:T3224A, after C2644T, Brazil JN.1.29.1 Alias of B.1.1.529.2.86.1.1.29.1, S:F456L +MJ.1 Alias of B.1.1.529.2.86.1.1.29.1.1.1, S:R346T, S:S31P, ORF1a:E2070K JN.1.30 Alias of B.1.1.529.2.86.1.1.30, G21255T JN.1.30.1 Alias of B.1.1.529.2.86.1.1.30.1, S:R346T, after T7789C, India, from sars-cov-2-variants/lineage-proposals#1089 KU.1 Alias of B.1.1.529.2.86.1.1.30.1.1, S:K182Q @@ -1287,9 +1318,10 @@ JN.1.47 Alias of B.1.1.529.2.86.1.1.47, C8074T, C7594T JN.1.47.1 Alias of B.1.1.529.2.86.1.1.47.1, S:S221L, USA/Mexico JN.1.47.2 Alias of B.1.1.529.2.86.1.1.47.2, S:T572I, S:R683Q, USA JN.1.48 Alias of B.1.1.529.2.86.1.1.48, G29134T, after T18471C, India -JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L, after ORF3a:A99V from #2547 +JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L, after ORF3a:A99V, on T3913A, C8092T branch from #2547 LD.1 Alias of B.1.1.529.2.86.1.1.48.1.1, S:T572I from #2547 JN.1.48.2 Alias of B.1.1.529.2.86.1.1.48.2, S:R346T, ORF1a:A427V, A3829G, India +JN.1.48.3 Alias of B.1.1.529.2.86.1.1.48.3, S:60P, S:R346T, S:F456L, ORF3a:S60F, ORF1a:T1761I, on T3913A, C8092T branch, South Africa JN.1.49 Alias of B.1.1.529.2.86.1.1.49, ORF3a:T89I, India JN.1.49.1 Alias of B.1.1.529.2.86.1.1.49.1, S:R346T MB.1 Alias of B.1.1.529.2.86.1.1.49.1.1, S:F456V (T22928G), S:S31F @@ -1297,6 +1329,8 @@ MB.1.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1, S:ST22N, S:K182N JN.1.49.2 Alias of B.1.1.529.2.86.1.1.49.2, S:F456L JN.1.50 Alias of B.1.1.529.2.86.1.1.50, S:H445P,S:F456L, S:A67V, S:L249F, Europe from #2587 JN.1.50.1 Alias of B.1.1.529.2.86.1.1.50.1, S:R346T from #2587 +JN.1.50.2 Alias of B.1.1.529.2.86.1.1.50.2, ORF1a:N1540S (A4884G, T4885C) +ME.1 Alias of B.1.1.529.2.86.1.1.50.2.1, S:R346K JN.1.51 Alias of B.1.1.529.2.86.1.1.51, C4795T JN.1.51.1 Alias of B.1.1.529.2.86.1.1.51.1, S:F456L LJ.1 Alias of B.1.1.529.2.86.1.1.51.1.1, S:T22N @@ -1326,6 +1360,18 @@ JN.1.61 Alias of B.1.1.529.2.86.1.1.61, S:K444R, Brazil JN.1.62 Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H JN.1.63 Alias of B.1.1.529.2.86.1.1.63, ORF1b:K82R JN.1.63.1 Alias of B.1.1.529.2.86.1.1.63.1, ORF1a:D1513E, ORF1a:A2529S, Asia +JN.1.64 Alias of B.1.1.529.2.86.1.1.64, ORF1a:N2147S (A6705G) +JN.1.64.1 Alias of B.1.1.529.2.86.1.1.64.1, S:R346T +MD.1 Alias of B.1.1.529.2.86.1.1.64.1.1, S:F456L (T22930A) +MD.1.1 Alias of B.1.1.529.2.86.1.1.64.1.1.1, S:K679R +MD.2 Alias of B.1.1.529.2.86.1.1.64.1.2, S:F456V, ORF1a:T2800I +MD.3 Alias of B.1.1.529.2.86.1.1.64.1.3, C1060T, C9319T, C28657T +MD.3.1 Alias of B.1.1.529.2.86.1.1.64.1.3.1, S:F456L (T22928C), ORF3a:L106F, C10138T, South Africa +JN.1.65 Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain +JN.1.65.1 Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain +MF.1 Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T +MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L +JN.1.66 Alias of B.1.1.529.2.86.1.1.66, S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 diff --git a/lineages.csv b/lineages.csv index b1149dcf..96cb5efc 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2513879,15 +2513879,9 @@ England/CLIMB-CM7YRJPM/2024,JN.1.18 England/CLIMB-CM7YET5A/2024,JN.1.18 England/CLIMB-CM7YRMP4/2024,JN.1.18 England/CLIMB-CM7YMBJ6/2023,JN.1.18 -India/MH_BJCOG_INSACOG_6307/2024,JN.1.18 Bangladesh/IEDCR-1625075/2024,JN.1.18 Bangladesh/IEDCR-1802057/2023,JN.1.18 -BGD/SIRS_3240113013/2024,JN.1.18 Bangladesh/IEDCR-1802649/2023,JN.1.18 -USA/AZ-ASPHL-0313/2024,JN.1.18 -USA/2024CV0313/2024,JN.1.18 -USA/AZ-ASPHL-0316/2024,JN.1.18 -USA/2024CV0316/2024,JN.1.18 USA/CA-CDPH-500131539/2023,JN.1.18 USA/CA-CDPH-500131550/2023,JN.1.18 USA/CA-CDPH-500131517/2023,JN.1.18 @@ -2526035,8 +2526029,6 @@ USA/NJ-CDC-LC1096894/2024,KT.1.2 USA/MI-SH_MSU-H05_I_0351_85/2023,KT.1.2 USA/KPMA269959/2024,KT.1.2 Canada/ON-PHL-202406135/2024,KP.3 -USA/CA-GBW-H20-361-5024/2024,KP.3 -USA/CA-GBW-H10-020-6514/2024,KP.3 England/WSI-331C9AF9/2024,JN.1.39.3 Singapore/R91MR100/2023,JN.1.39.3 Indonesia/JK-OUCRU-GSILab-1156349/2024,JN.1.39.3 @@ -2537906,10 +2537898,6 @@ USA/TX-UHS-UTHSA10426-P0/2024,JN.1.7.3 England/CLIMB-CM7YKAUG/2024,JN.1.7.3 England/CLIMB-CM7YRG8U/2024,JN.1.7.3 England/CLIMB-CM7YR3RA/2024,JN.1.7.3 -PuertoRico/S-6575/2024,JN.1.7.3 -USA/TX-HMH-M-140233/2024,JN.1.7.3 -USA/CA-CDPH-500133862/2024,JN.1.7.3 -USA/CA-HLX-STM-T7CWBD783/2024,JN.1.7.3 Canada/SK-RRPL-706258/2024,KP.4 England/CLIMB-CM7YGA6B/2024,KP.4 Singapore/R12MQ37/2024,KP.4 @@ -2537984,7 +2537972,6 @@ Canada/AB-ABPHL-115648/2024,KP.4.2 Canada/AB-ABPHL-115647/2024,KP.4.2 USA/NY-CDC-LC1100583/2024,KP.4.2 USA/NY-NYULH-18548/2024,KP.4.2 -Ireland/CO-CUH-SC0114/2024,KP.4.2 Spain/GA-CHUAC-12127/2024,KP.4.2 India/MH_BJCOG_6499/2024,KP.4.2 USA/NY-GBW-GKISBBBB33440/2024,KP.4.2 @@ -2539142,9 +2539129,6 @@ England/CLIMB-CM7YJ5UY/2024,JN.1.48 India/GJ-INSACOG-GBRC13709/2023,JN.1.48 India/DL-IGIB22500010275/2024,JN.1.48 USA/NY-GBW-H20-357-8774/2024,JN.1.48 -USA/VA-GBW-H20-341-6745/2024,JN.1.48.1 -USA/VA-GBW-H10-012-3461/2024,JN.1.48.1 -USA/NY-PRL-240409_81D02/2024,JN.1.48.1 England/CLIMB-CM7YKUPW/2024,JN.1.48.1 Australia/WA15994/2024,JN.1.48.1 USA/NJ-GBW-H20-345-9760/2024,JN.1.48.1 @@ -2542583,7 +2542567,6 @@ CHN/HB-Huangshi-4702/2024,JN.1 USA/VA-VTVAS3-GSC44567/2023,JN.1 USA/CA-CDPH-500129507/2023,JN.1 Germany/NW-RKI-I-1143050/2024,JN.1 -England/CLIMB-CM7YJCHE/2024,JN.1 CHN/YNCDC-3596/2023,JN.1 CHN/YNCDC-3595/2023,JN.1 Japan/PG-596896/2024,JN.1 @@ -2543132,62 +2543115,6 @@ Ireland/KE-NVRL-GIRL00111647/2023,JN.1 USA/TX-HMH-M-137829/2024,JN.1 England/CLIMB-CM7YGWYW/2023,JN.1 England/CLIMB-CM7Y84F8/2023,JN.1 -Japan/PG-588172/2023,JN.1 -Japan/PG-588173/2023,JN.1 -USA/VA-GBW-H20-355-5462/2024,JN.1 -USA/NY-CDC-QDX91017527/2024,JN.1 -USA/NY-CDC-QDX90947986/2024,JN.1 -USA/CA-CDPH-500130401/2023,JN.1 -Japan/PG-589203/2024,JN.1 -Singapore/R4MQ35/2024,JN.1 -Oman/CPHL_72463/2023,JN.1 -Malaysia/UNIMAS-GHML2180/2024,JN.1 -England/CLIMB-CM7YRSEJ/2023,JN.1 -England/CLIMB-CM7YFNO1/2024,JN.1 -England/CLIMB-CM7YGURT/2024,JN.1 -Pakistan/NIHPV-AFIP-10/2024,JN.1 -Taiwan/CDC-F92152/2024,JN.1 -USA/NY-SUNYQB-X9210/2024,JN.1 -Netherlands/NH-RIVM-136179/2023,JN.1 -Sweden/N-2A817671523/2024,JN.1 -CHN/HeNanJZCDC-24030/2024,JN.1 -Henan/JZCDC-030/2024,JN.1 -Japan/PG-588777/2024,JN.1 -USA/CA-CDPH-500133488/2024,JN.1 -Pakistan/NIV-AFIP-11/2024,JN.1 -SouthKorea/KDCA280354/2023,JN.1 -USA/CA-HLX-STM-56GXUDH7G/2024,JN.1 -USA/GA-CDC-QDX92611179/2024,JN.1 -England/WSI-3319FCF6/2024,JN.1 -England/CLIMB-CM7YFI34/2024,JN.1 -Australia/QLD0x013F99/2024,JN.1 -Australia/QLD0x013F60/2024,JN.1 -USA/CT-Yale-25553/2024,JN.1 -USA/CT-Yale-25606/2024,JN.1 -USA/CT-Yale-25584/2024,JN.1 -USA/WA-S24598/2023,JN.1 -USA/WA-S24594/2023,JN.1 -USA/CT-Yale-25511/2024,JN.1 -England/CLIMB-CM7YRQJO/2024,JN.1 -England/CLIMB-CM7YEPDM/2023,JN.1 -USA/NY-PRL-231221_81H08/2023,JN.1 -England/CLIMB-CM7YMXCN/2023,JN.1 -Singapore/R1MQ137/2024,JN.1 -Singapore/R1MQ207/2024,JN.1 -Denmark/DCGC-669886/2024,JN.1 -USA/HI-H2326664/2023,JN.1 -Singapore/R1MQ117/2023,JN.1 -England/CLIMB-CM7YF4I6/2023,JN.1 -France/BRE-IPP31021/2023,JN.1 -France/IDF-IPP31512/2023,JN.1 -Australia/SA1128407/2023,JN.1 -Oman/CPHL_7236365/2023,JN.1 -England/WSI-3316A5BD/2023,JN.1 -USA/VA-CDC-QDX88549306/2023,JN.1 -England/CLIMB-CM7Y8JSP/2023,JN.1 -France/ARA-HCL723001623301/2023,JN.1 -USA/NJ-GBW-H20-344-1448/2023,JN.1 -Indonesia/JB-WJHL-ITB-SITH-W05618/2023,JN.1 Sweden/O-14_SE300_DC24-000192/2024,JN.1 Greece/PHLnetwork_KEDY_359/2024,JN.1 England/CLIMB-CM7YJBXA/2023,JN.1 @@ -2544386,25 +2544313,9 @@ Wales/CLIMB-CM7Y8J7M/2024,KP.3.1 Wales/CLIMB-CM7YJQUP/2024,KP.3.1 Wales/CLIMB-CM7YRA41/2024,KP.3.1 Wales/CLIMB-CM7YGD1F/2024,KP.3.1 -Australia/SA1347742/2024,KP.3.1 -Australia/SA1352669/2024,KP.3.1 -Canada/AB-ABPHL-117005/2024,KP.3.1 Canada/AB-ABPHL-117375/2024,KP.3.1 -Canada/AB-ABPHL-116670/2024,KP.3.1 -Australia/SA1372139/2024,KP.3.1 -USA/MD-CDC-QDX96017835/2024,KP.3.1 -USA/NY-CDC-QDX95677494/2024,KP.3.1 USA/2024CV0730/2024,KP.3.1 USA/AZ-ASPHL-0730/2024,KP.3.1 -Australia/SA1443993/2024,KP.3.1 -USA/FL-GBW-GKISBBBC38383/2024,KP.3.1 -Singapore/R22MQ59/2024,KP.3.1 -NewZealand/24YA3351/2024,KP.3.1 -USA/CA-GBW-GKISBBBC31162/2024,KP.3.1 -USA/UT-UPHL-240502478839/2024,KP.3.1 -USA/CA-CDPH-500136258/2024,KP.3.1 -USA/PA-CDC-LC1103149/2024,KP.3.1 -USA/SC-CDC-LC1102747/2024,KP.3.1 Australia/NSW-ICPMR-53586/2024,KP.3.1 Australia/NSW-ICPMR-53703/2024,KP.3.1 Australia/QLD0x014351/2024,KP.3.1 @@ -2544542,7 +2544453,6 @@ USA/OH-ODH-SC4031761/2024,KP.3 USA/OH-ODH-SC4031629/2024,KP.3 Canada/BC-BCCDC-709225/2024,KP.3 Canada/BC-BCCDC-709203/2024,KP.3 -USA/CA-KP002332/2024,KP.3 Singapore/R22MQ73/2024,KP.3 USA/NJ-CDC-LC1102889/2024,KP.3 USA/NJ-CDC-LC1102856/2024,KP.3 @@ -2544571,13 +2544481,6 @@ Australia/SA1450901/2024,KP.3 Australia/SA1448835/2024,KP.3 Australia/SA1443596/2024,KP.3 Australia/SA1389909/2024,KP.3 -Singapore/R19MQ45/2024,KP.3 -Thailand/NIC_BKK_1049/2024,KP.3 -Singapore/R19MQ90/2024,KP.3 -Singapore/R21MQ41/2024,KP.3 -USA/TX-KVI400696/2024,KP.3 -Taiwan/CDC-W37461/2024,KP.3 -USA/NY-CDC-LC1102765/2024,KP.3 USA/NY-GBW-GKISBBBB60523/2024,KP.3 USA/NY-GBW-GKPLAAAA13636/2024,KP.3 Canada/ON-PHL-202407701/2024,KP.3 @@ -2545024,35 +2544927,6 @@ Australia/QLD0x0143C9/2024,KP.3.3 Australia/SA1439631/2024,KP.3.3 Australia/SA1450904/2024,KP.3.3 Australia/SA1439637/2024,KP.3.3 -Japan/FR302-0052/2024,KP.3.3 -Japan/FR014-0068/2024,KP.3.3 -Japan/FR088-0022/2024,KP.3.3 -Japan/SUPCRC-6331/2024,KP.3.3 -Japan/FR047-0004/2024,KP.3.3 -Japan/FR004-0053/2024,KP.3.3 -Japan/TKYnat16916/2024,KP.3.3 -Japan/TKYnat16782/2024,KP.3.3 -Japan/FR050-0074/2024,KP.3.3 -USA/HI-H2328530/2024,KP.3.3 -USA/HI-H2328537/2024,KP.3.3 -Japan/FR062-0105/2024,KP.3.3 -Japan/FR035-0032/2024,KP.3.3 -Japan/FR079-0040/2024,KP.3.3 -Japan/FR001-0024/2024,KP.3.3 -Japan/FR014-0104/2024,KP.3.3 -Japan/FR302-0487/2024,KP.3.3 -Japan/FR302-0462/2024,KP.3.3 -Japan/FR021-0321/2024,KP.3.3 -Japan/FR041-0032/2024,KP.3.3 -Japan/FR014-0078/2024,KP.3.3 -Japan/FR079-0026/2024,KP.3.3 -Japan/FR079-0030/2024,KP.3.3 -Japan/FR012-0074/2024,KP.3.3 -Japan/FR021-0317/2024,KP.3.3 -Japan/FR021-0308/2024,KP.3.3 -Japan/SUPCRC-6338/2024,KP.3.3 -Japan/SUPCRC-6359/2024,KP.3.3 -Japan/SUPCRC-6355/2024,KP.3.3 Japan/PG-596515/2024,JN.15 Japan/FR301-0230/2024,JN.15 Japan/FR044-0003/2024,JN.15 @@ -2550159,12 +2550033,6 @@ England/CLIMB-CM7YJNFG/2024,JN.1.48.1 England/CLIMB-CM7YJIBM/2024,JN.1.48.1 England/CLIMB-CM7YKGGD/2024,JN.1.48.1 England/CLIMB-CM7Y8JH3/2024,JN.1.48.1 -USA/NY-SUNYQB-X9418/2024,JN.1.48.1 -USA/NY-SUNYQB-X9300/2024,JN.1.48.1 -France/IDF-IPP05298/2024,JN.1.48.1 -USA/NY-SUNYQB-X9304/2024,JN.1.48.1 -SouthAfrica/CERI-KRISP-K061752/2024,JN.1.48.1 -SouthAfrica/CERI-KRISP-K061771/2024,JN.1.48.1 Canada/ON-KHS-02190-v1/2024,JN.1.48.1 England/CLIMB-CM7YJ7G8/2024,JN.1.48.1 Ireland/D-CS0147/2024,JN.1.48.1 @@ -2550268,29 +2550136,6 @@ England/CLIMB-CM7YRE74/2024,LM.1 England/CLIMB-CM7YJAU6/2024,LM.1 England/CLIMB-CM7YFWTA/2024,LM.1 England/CLIMB-CM7YRWRK/2024,LM.1 -Singapore/R22MQ63/2024,KS.1.1 -Taiwan/CDC-W37626/2024,KS.1.1 -Singapore/R22MQ46/2024,KS.1.1 -Singapore/R22MQ54/2024,KS.1.1 -Singapore/R21MQ119/2024,KS.1.1 -Singapore/R21MQ79/2024,KS.1.1 -Singapore/R23MQ3/2024,KS.1.1 -USA/NY-PRL-240507_81C07/2024,KS.1.1 -USA/NY-GBW-GKISBBBB61115/2024,KS.1.1 -Canada/AB-ABPHL-116914/2024,KS.1.1 -USA/NY-GBW-GKPLAAAA10392/2024,KS.1.1 -USA/NY-GBW-GKISBBBC29587/2024,KS.1.1 -Canada/ON-PHL-202407388/2024,KS.1.1 -Canada/ON-PHL-202407660/2024,KS.1.1 -Canada/ON-PHL-202407574/2024,KS.1.1 -Canada/ON-PHL-202407645/2024,KS.1.1 -Canada/ON-PHL-202407792/2024,KS.1.1 -Canada/AB-ABPHL-117678/2024,KS.1.1 -Canada/ON-PHL-202408041/2024,KS.1.1 -Canada/ON-PHL-202407793/2024,KS.1.1 -Canada/ON-PHL-202408109/2024,KS.1.1 -Canada/ON-PHL-202408110/2024,KS.1.1 -Canada/ON-PHL-202408148/2024,KS.1.1 Canada/ON-PHL-202406879/2024,JN.1.53 USA/MA-CDC-QDX91072458/2024,JN.1.53 USA/TX-HMH-M-137977/2024,JN.1.53 @@ -2553158,27 +2553003,8 @@ USA/CA-CDC-LC1104743/2024,LB.1.3 PuertoRico/PR-PRPHL-MB1010/2024,LB.1.3 Canada/NB-CHUDGLD-23E-MM00041R/2024,LB.1.3 USA/NV-NSPHL-S000825/2024,LB.1.3 -USA/CO-CDPHE-41888043/2024,LB.1.3 -NewZealand/24ZA1977/2024,LB.1.3 -USA/NY-GBW-GKISBBBB35289/2024,LB.1.3 -USA/CA-GBW-GKPLAAAA13564/2024,LB.1.3 -USA/CA-GBW-GKISBBBB22718/2024,LB.1.3 -Canada/NL-NML-711424/2024,LB.1.3 -Canada/NL-NML-711425/2024,LB.1.3 -USA/VA-CDC-LC1103214/2024,LB.1.3 -USA/NY-PRL-240514_81E04/2024,LB.1.3 -USA/NY-CDC-LC1104045/2024,LB.1.3 -USA/NY-PRL-240521_81E02/2024,LB.1.3 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"B.1.1.529.2.86.1.1.18.3", "MB": "B.1.1.529.2.86.1.1.49.1", "MC": "B.1.1.529.2.86.1.1.11.1.3.1.1", + "MD": "B.1.1.529.2.86.1.1.64.1", + "ME": "B.1.1.529.2.86.1.1.50.2", + "MF": "B.1.1.529.2.86.1.1.65.1", + "MG": "B.1.1.529.2.86.1.1.11.1.1.1.1", + "MH": "B.1.1.529.2.86.1.1.9.2.1.3.2", + "MJ": "B.1.1.529.2.86.1.1.29.1", + "MK": "B.1.1.529.2.86.1.1.11.1.3.1.6", + "ML": "B.1.1.529.2.86.1.1.11.1.3.3.3", + "MM": "B.1.1.529.2.86.1.1.11.1.3.1.4", + "MN": "B.1.1.529.2.86.1.1.18.7", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"], diff --git a/scripts/issue-milestone-collector/README.md b/scripts/issue-milestone-collector/README.md index 53ec69b6..b5dc3e11 100644 --- a/scripts/issue-milestone-collector/README.md +++ b/scripts/issue-milestone-collector/README.md @@ -1,5 +1,6 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO :--- | :--- | :---: | :---: | :--- | :-- +`` | `` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `A.2.5.1` | `A.2.5.1` | [⚑ 25](https://github.com/cov-lineages/pango-designation/milestone/25?closed=1) | [#33](https://github.com/cov-lineages/pango-designation/issues/33) | https://github.com/cov-lineages/pango-designation/labels/designated | main `A.2.5.3` | `A.2.5.3` | [⚑ 89](https://github.com/cov-lineages/pango-designation/milestone/89?closed=1) | [#168](https://github.com/cov-lineages/pango-designation/issues/168) | https://github.com/cov-lineages/pango-designation/labels/designated | main `A.27` | `A.27` | [⚑ 6](https://github.com/cov-lineages/pango-designation/milestone/6?closed=1) | [#11](https://github.com/cov-lineages/pango-designation/issues/11) | https://github.com/cov-lineages/pango-designation/labels/designated | main @@ -280,10 +281,10 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.1` | `B.1.1.529.2.86.1.1.1` | [⚑ 378](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/378?closed=1) | [#987](https://github.com/sars-cov-2-variants/lineage-proposals/issues/987) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [Orf6](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Orf6), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.1.1` | `B.1.1.529.2.86.1.1.1.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.1.2` | `B.1.1.529.2.86.1.1.1.2` | [⚑ 382](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/382?closed=1) | [#1147 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1147) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:181](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A181), [SLip](https://github.com/sars-cov-2-variants/lineage-proposals/labels/SLip) | 2nd -`JN.1.1.3` | `B.1.1.529.2.86.1.1.1.3` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.1.3` | `B.1.1.529.2.86.1.1.1.3` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.1.4` | `B.1.1.529.2.86.1.1.1.4` | [⚑ 843](https://github.com/cov-lineages/pango-designation/milestone/843?closed=1) | [#2476](https://github.com/cov-lineages/pango-designation/issues/2476) | | main `JN.1.1.4` | `B.1.1.529.2.86.1.1.1.4` | [⚑ 417](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/417?closed=1) | [#1259](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1259) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1264](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1264), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`JN.1.1.5` | `B.1.1.529.2.86.1.1.1.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.1.5` | `B.1.1.529.2.86.1.1.1.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KR.1` | `B.1.1.529.2.86.1.1.1.5 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KR.1.1` | `B.1.1.529.2.86.1.1.1.5 .1.1` | [⚑ 488](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/488?closed=1) | [#1545](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1545) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KR.2` | `B.1.1.529.2.86.1.1.1.5 .2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd @@ -297,70 +298,88 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.11` | `B.1.1.529.2.86.1.1.11` | [⚑ 400](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/400?closed=1) | [#1262](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1262) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104) | 2nd `JN.1.11.1` | `B.1.1.529.2.86.1.1.11.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1` | `B.1.1.529.2.86.1.1.11.1 .1` | [⚑ 419](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/419?closed=1) | [#1364](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1364) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086) | 2nd -`KP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`MG.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.1.1` | [⚑ 521](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/521?closed=1) | [#1623](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1623) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:182](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A182), [S:679](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A679), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1.1.2` | `B.1.1.529.2.86.1.1.11.1 .1.1.2` | [⚑ 473](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/473?closed=1) | [#1541](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1541) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [S:1162](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1162), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`KP.1.1.3` | `B.1.1.529.2.86.1.1.11.1 .1.1.3` | [⚑ 485](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/485?closed=1) | [#1502](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [DelRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DelRT) | 2nd -`LP.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1` | [⚑ 495](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/495?closed=1) | [#1591](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1591) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd +`LP.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1` | [⚑ 495](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/495?closed=1) | [#1591](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1591) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`LP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1.1` | [⚑ 513](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/513?closed=1) | [#1633](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1633) | [S.1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%2E1229), [S:255](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A255), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd `KP.1.1.4` | `B.1.1.529.2.86.1.1.11.1 .1.1.4` | [⚑ 494](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/494?closed=1) | [#1593](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1593) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:214](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A214), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1.2` | `B.1.1.529.2.86.1.1.11.1 .1.2` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`KP.2` | `B.1.1.529.2.86.1.1.11.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.2` | `B.1.1.529.2.86.1.1.11.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.2.1` | `B.1.1.529.2.86.1.1.11.1 .2.1` | [⚑ 439](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/439?closed=1) | [#1440](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1440) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [s:1201](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1201), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.2.10` | `B.1.1.529.2.86.1.1.11.1 .2.10` | [⚑ 469](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/469?closed=1) | [#1553](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1553) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.11` | `B.1.1.529.2.86.1.1.11.1 .2.11` | [⚑ 470](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/470?closed=1) | [#1520](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1520) | [Small clusters ??](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Small%20clusters%20%3F%3F), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [S:56](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A56) | 2nd `KP.2.12` | `B.1.1.529.2.86.1.1.11.1 .2.12` | [⚑ 472](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/472?closed=1) | [#1550](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1550) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1176](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1176), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.14` | `B.1.1.529.2.86.1.1.11.1 .2.14` | [⚑ 481](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/481?closed=1) | [#1578](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1578) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [S:184](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A184), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [S:22](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A22), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.2` | `B.1.1.529.2.86.1.1.11.1 .2.2` | [⚑ 438](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/438?closed=1) | [#1446](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1446) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [s:1266](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1266) | 2nd -`KP.2.3` | `B.1.1.529.2.86.1.1.11.1 .2.3` | [⚑ 455](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/455?closed=1) | [#1459](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1459) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd +`KP.2.3` | `B.1.1.529.2.86.1.1.11.1 .2.3` | [⚑ 455](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/455?closed=1) | [#1459](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1459) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd `KP.2.3.1` | `B.1.1.529.2.86.1.1.11.1 .2.3.1` | [⚑ 471](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/471?closed=1) | [#1548](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1548) | | 2nd +`KP.2.3.3` | `B.1.1.529.2.86.1.1.11.1 .2.3.3` | [⚑ 516](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/516?closed=1) | [#1618](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1618) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [orf8](https://github.com/sars-cov-2-variants/lineage-proposals/labels/orf8), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`KP.2.3.4` | `B.1.1.529.2.86.1.1.11.1 .2.3.4` | [⚑ 510](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/510?closed=1) | [#1596](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1596) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd `KP.2.4` | `B.1.1.529.2.86.1.1.11.1 .2.4` | [⚑ 466](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/466?closed=1) | [#1524](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1524) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:250](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A250), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.5` | `B.1.1.529.2.86.1.1.11.1 .2.5` | [⚑ 467](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/467?closed=1) | [#1527](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1527) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.8` | `B.1.1.529.2.86.1.1.11.1 .2.8` | [⚑ 468](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/468?closed=1) | [#1546](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1546) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd -`KP.2.9` | `B.1.1.529.2.86.1.1.11.1 .2.9` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.2.9` | `B.1.1.529.2.86.1.1.11.1 .2.9` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.3` | `B.1.1.529.2.86.1.1.11.1 .3` | [⚑ 434](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/434?closed=1) | [#1410](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1410) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:493](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A493), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104) | 2nd `KP.3.1.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.1` | [⚑ 480](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/480?closed=1) | [#1563](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1563) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MC.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.1.1` | [⚑ 507](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/507?closed=1) | [#1638](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1638) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.1.2` | `B.1.1.529.2.86.1.1.11.1 .3.1.2` | [⚑ 491](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/491?closed=1) | [#1589](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1589) | [S:151](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A151), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd -`KP.3.1.3` | `B.1.1.529.2.86.1.1.11.1 .3.1.3` | [⚑ 493](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/493?closed=1) | [#1576 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.1.3` | `B.1.1.529.2.86.1.1.11.1 .3.1.3` | [⚑ 493](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/493?closed=1) | [#1576 🔵](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.1.4` | `B.1.1.529.2.86.1.1.11.1 .3.1.4` | [⚑ 492](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/492?closed=1) | [#1562](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1562) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Mutations outside spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Mutations%20outside%20spike), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MM.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.4.1` | [⚑ 527](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/527?closed=1) | [#1624](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1624) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MM.2` | `B.1.1.529.2.86.1.1.11.1 .3.1.4.2` | [⚑ 526](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/526?closed=1) | [#1716](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1716) | [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [S:35](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A35), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.1.5` | `B.1.1.529.2.86.1.1.11.1 .3.1.5` | [⚑ 506](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/506?closed=1) | [#1614](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1614) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:556](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A556), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MK.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.6.1` | [⚑ 523](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/523?closed=1) | [#1605](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1605) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MK.2` | `B.1.1.529.2.86.1.1.11.1 .3.1.6.2` | [⚑ 524](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/524?closed=1) | [#1606](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1606) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [Mutations outside spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Mutations%20outside%20spike), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [S:745](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A745) | 2nd `KP.3.2.1` | `B.1.1.529.2.86.1.1.11.1 .3.2.1` | [⚑ 487](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/487?closed=1) | [#1556](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1556) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [S:263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A263) | 2nd `KP.3.2.5` | `B.1.1.529.2.86.1.1.11.1 .3.2.5` | [⚑ 499](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/499?closed=1) | [#1604](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1604) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated) | 2nd `KP.3.3` | `B.1.1.529.2.86.1.1.11.1 .3.3` | [⚑ 475](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/475?closed=1) | [#1531](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1531) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd -`KP.4.1` | `B.1.1.529.2.86.1.1.11.1 .4.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.3.3.1` | `B.1.1.529.2.86.1.1.11.1 .3.3.1` | [⚑ 508](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/508?closed=1) | [#1651](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1651) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [S:547](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A547) | 2nd +`KP.3.3.2` | `B.1.1.529.2.86.1.1.11.1 .3.3.2` | [⚑ 522](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/522?closed=1) | [#1673](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1673) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [S:435](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A435), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`ML.1` | `B.1.1.529.2.86.1.1.11.1 .3.3.3.1` | [⚑ 525](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/525?closed=1) | [#1683](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1683) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:681](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A681), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.4.1` | `B.1.1.529.2.86.1.1.11.1 .3.4.1` | [⚑ 493](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/493?closed=1) | [#1576 🔵](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.5` | `B.1.1.529.2.86.1.1.11.1 .3.5` | [⚑ 529](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/529?closed=1) | [#1630](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1630) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:213](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A213), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.4.1` | `B.1.1.529.2.86.1.1.11.1 .4.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.4.1.2` | `B.1.1.529.2.86.1.1.11.1 .4.1.2` | [⚑ 505](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/505?closed=1) | [#1611](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1611) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [S:441](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A441) | 2nd -`KP.4.2` | `B.1.1.529.2.86.1.1.11.1 .4.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.4.2` | `B.1.1.529.2.86.1.1.11.1 .4.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.5` | `B.1.1.529.2.86.1.1.11.1 .5` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.12` | `B.1.1.529.2.86.1.1.12` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.13` | `B.1.1.529.2.86.1.1.13` | [⚑ 844](https://github.com/cov-lineages/pango-designation/milestone/844?closed=1) | [#2464](https://github.com/cov-lineages/pango-designation/issues/2464) | | main `KS.1` | `B.1.1.529.2.86.1.1.13.1 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KS.1.1` | `B.1.1.529.2.86.1.1.13.1 .1.1` | [⚑ 482](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/482?closed=1) | [#1565](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1565) | [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [S:22](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A22), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [S:1087](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1087), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KS.1.3` | `B.1.1.529.2.86.1.1.13.1 .1.3` | [⚑ 520](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/520?closed=1) | [#1535](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1535) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [Small clusters ??](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Small%20clusters%20%3F%3F), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [S:642](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A642) | 2nd `JN.1.15.1` | `B.1.1.529.2.86.1.1.15.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LU.1` | `B.1.1.529.2.86.1.1.15.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LU.1` | `B.1.1.529.2.86.1.1.15.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LU.2` | `B.1.1.529.2.86.1.1.15.1 .2` | [⚑ 515](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/515?closed=1) | [#1652](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1652) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.16` | `B.1.1.529.2.86.1.1.16` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.16.1` | `B.1.1.529.2.86.1.1.16.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.16.1` | `B.1.1.529.2.86.1.1.16.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LF.1.1` | `B.1.1.529.2.86.1.1.16.1 .1.1` | [⚑ 474](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/474?closed=1) | [#1448](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1448) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1263), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LF.1.1.1` | `B.1.1.529.2.86.1.1.16.1 .1.1.1` | [⚑ 474](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/474?closed=1) | [#1448](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1448) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1263), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LF.2` | `B.1.1.529.2.86.1.1.16.1 .2` | [⚑ 485](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/485?closed=1) | [#1502](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [DelRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DelRT) | 2nd `LF.3.1` | `B.1.1.529.2.86.1.1.16.1 .3.1` | [⚑ 490](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/490?closed=1) | [#1558](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [S:745](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A745) | 2nd +`LF.3.1.1` | `B.1.1.529.2.86.1.1.16.1 .3.1.1` | [⚑ 490](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/490?closed=1) | [#1558](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [S:745](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A745) | 2nd +`LF.4.1` | `B.1.1.529.2.86.1.1.16.1 .4.1` | [⚑ 514](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/514?closed=1) | [#1590](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1590) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [Truncated Orf(3-10)](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Truncated%20Orf(3-10)), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [orf8](https://github.com/sars-cov-2-variants/lineage-proposals/labels/orf8), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`LF.5` | `B.1.1.529.2.86.1.1.16.1 .5` | [⚑ 519](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/519?closed=1) | [#1627](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1627) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [S:33](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A33) | 2nd `JN.1.16.2` | `B.1.1.529.2.86.1.1.16.2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LA.1` | `B.1.1.529.2.86.1.1.16.2 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LA.2` | `B.1.1.529.2.86.1.1.16.2 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.18` | `B.1.1.529.2.86.1.1.18` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LA.2` | `B.1.1.529.2.86.1.1.16.2 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.18` | `B.1.1.529.2.86.1.1.18` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.18.1` | `B.1.1.529.2.86.1.1.18.1` | [⚑ 431](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/431?closed=1) | [#1414](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1414) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:250](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A250) | 2nd `LQ.1` | `B.1.1.529.2.86.1.1.18.1 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LQ.1.1` | `B.1.1.529.2.86.1.1.18.1 .1.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LQ.2` | `B.1.1.529.2.86.1.1.18.1 .2` | [⚑ 431](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/431?closed=1) | [#1414](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1414) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:250](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A250) | 2nd `JN.1.18.2` | `B.1.1.529.2.86.1.1.18.2` | [⚑ 441](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/441?closed=1) | [#1441](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1441) | [Convergent evolution](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Convergent%20evolution), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59) | 2nd `JN.1.18.3` | `B.1.1.529.2.86.1.1.18.3` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`MA.1` | `B.1.1.529.2.86.1.1.18.3 .1` | [⚑ 511](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/511?closed=1) | [#1635](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1635) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [DeFViRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFViRT) | 2nd `JN.1.18.4` | `B.1.1.529.2.86.1.1.18.4` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.18.5` | `B.1.1.529.2.86.1.1.18.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.18.5` | `B.1.1.529.2.86.1.1.18.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.2` | `B.1.1.529.2.86.1.1.2` | [⚑ 267](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/267?closed=1) | [#1087](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1087) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.2.1` | `B.1.1.529.2.86.1.1.2.1` | [⚑ 409](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/409?closed=1) | [#1322](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1322) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1101](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1101) | 2nd `JN.1.21` | `B.1.1.529.2.86.1.1.21` | [⚑ 415](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/415?closed=1) | [#1162](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1162) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1058](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1058) | 2nd `JN.1.23` | `B.1.1.529.2.86.1.1.23` | [⚑ 845](https://github.com/cov-lineages/pango-designation/milestone/845?closed=1) | [#2488](https://github.com/cov-lineages/pango-designation/issues/2488) | | main `JN.1.23.1` | `B.1.1.529.2.86.1.1.23.1` | [⚑ 486](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/486?closed=1) | [#1552](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1552) | [S:1264](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1264), [NSP3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP3), [JN.1.23](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%2E23), [S:137](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A137) | 2nd -`JN.1.24.1` | `B.1.1.529.2.86.1.1.24.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LM.1` | `B.1.1.529.2.86.1.1.25.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.26` | `B.1.1.529.2.86.1.1.26` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.24.1` | `B.1.1.529.2.86.1.1.24.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LM.1` | `B.1.1.529.2.86.1.1.25.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.26` | `B.1.1.529.2.86.1.1.26` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.27` | `B.1.1.529.2.86.1.1.27` | [⚑ 429](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/429?closed=1) | [#1403](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1403) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:153](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A153), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.28.1` | `B.1.1.529.2.86.1.1.28.1` | [⚑ 447](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/447?closed=1) | [#1244](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1244) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/combo), [PLPro](https://github.com/sars-cov-2-variants/lineage-proposals/labels/PLPro), [S:t572I](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3At572I) | 2nd `KW.1` | `B.1.1.529.2.86.1.1.28.1 .1` | [⚑ 447](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/447?closed=1) | [#1244](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1244) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/combo), [PLPro](https://github.com/sars-cov-2-variants/lineage-proposals/labels/PLPro), [S:t572I](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3At572I) | 2nd @@ -368,27 +387,27 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `KW.1.1.1` | `B.1.1.529.2.86.1.1.28.1 .1.1.1` | [⚑ 476](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/476?closed=1) | [#1504](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1504) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:95](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A95), [Convergent Trio 346/456/572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Convergent%20Trio%20346%2F456%2F572), [FLIRT combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLIRT%20combo) | 2nd `LG.1` | `B.1.1.529.2.86.1.1.28.1 .1.1.1.1` | [⚑ 476](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/476?closed=1) | [#1504](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1504) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:95](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A95), [Convergent Trio 346/456/572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Convergent%20Trio%20346%2F456%2F572), [FLIRT combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLIRT%20combo) | 2nd `JN.1.29.1` | `B.1.1.529.2.86.1.1.29.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.30.1` | `B.1.1.529.2.86.1.1.30.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`KU.2` | `B.1.1.529.2.86.1.1.30.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.30.1` | `B.1.1.529.2.86.1.1.30.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KU.2` | `B.1.1.529.2.86.1.1.30.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.31` | `B.1.1.529.2.86.1.1.31` | [⚑ 432](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/432?closed=1) | [#1319](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1319) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Branch](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Branch), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.32.1` | `B.1.1.529.2.86.1.1.32.1` | [⚑ 456](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/456?closed=1) | [#1442](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1442) | [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572) | 2nd -`JN.1.33` | `B.1.1.529.2.86.1.1.33` | [⚑ 435](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/435?closed=1) | [#1395](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1395) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:67](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A67) | 2nd `JN.1.35` | `B.1.1.529.2.86.1.1.35` | [⚑ 437](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/437?closed=1) | [#1362](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1362) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FCS](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FCS), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd `JN.1.36` | `B.1.1.529.2.86.1.1.36` | [⚑ 443](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/443?closed=1) | [#1326](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1326) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:677](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A677), [FCS](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FCS), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd `JN.1.36.1` | `B.1.1.529.2.86.1.1.36.1` | [⚑ 443](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/443?closed=1) | [#1326](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1326) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:677](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A677), [FCS](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FCS), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd -`JN.1.39.1` | `B.1.1.529.2.86.1.1.39.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.39.1` | `B.1.1.529.2.86.1.1.39.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.39.3` | `B.1.1.529.2.86.1.1.39.3` | [⚑ 435](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/435?closed=1) | [#1395](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1395) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:67](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A67) | 2nd `JN.1.4` | `B.1.1.529.2.86.1.1.4` | [⚑ 378](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/378?closed=1) | [#987](https://github.com/sars-cov-2-variants/lineage-proposals/issues/987) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [Orf6](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Orf6), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.4.1` | `B.1.1.529.2.86.1.1.4.1` | [⚑ 408](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/408?closed=1) | [#1175](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1175) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:654](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A654), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.4.2` | `B.1.1.529.2.86.1.1.4.2` | [⚑ 839](https://github.com/cov-lineages/pango-designation/milestone/839?closed=1) | [#2462](https://github.com/cov-lineages/pango-designation/issues/2462) | | main `JN.1.4.2` | `B.1.1.529.2.86.1.1.4.2` | [⚑ 413](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/413?closed=1) | [#1180](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1180) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `LL.1` | `B.1.1.529.2.86.1.1.4.2 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.4.3` | `B.1.1.529.2.86.1.1.4.3` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`JN.1.4.4` | `B.1.1.529.2.86.1.1.4.4` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.4.4` | `B.1.1.529.2.86.1.1.4.4` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.4.5` | `B.1.1.529.2.86.1.1.4.5` | [⚑ 430](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/430?closed=1) | [#1171 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1171) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `KV.2` | `B.1.1.529.2.86.1.1.4.5 .2` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.4.6` | `B.1.1.529.2.86.1.1.4.6` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`LE.1` | `B.1.1.529.2.86.1.1.4.7 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LE.1.1` | `B.1.1.529.2.86.1.1.4.7 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LE.1` | `B.1.1.529.2.86.1.1.4.7 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LE.1.1` | `B.1.1.529.2.86.1.1.4.7 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LE.1.3.1` | `B.1.1.529.2.86.1.1.4.7 .1.3.1` | [⚑ 503](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/503?closed=1) | [#1612](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1612) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:84](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A84), [S:173](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A173), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.4.8` | `B.1.1.529.2.86.1.1.4.8` | [⚑ 496](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/496?closed=1) | [#1495](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1495) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60) | 2nd `JN.1.40` | `B.1.1.529.2.86.1.1.40` | [⚑ 442](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/442?closed=1) | [#1451](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1451) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [S:58](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A58) | 2nd @@ -398,28 +417,39 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.47.1` | `B.1.1.529.2.86.1.1.47.1` | [⚑ 457](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/457?closed=1) | [#1318 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1318) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:221](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A221) | 2nd `JN.1.47.2` | `B.1.1.529.2.86.1.1.47.2` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.48.1` | `B.1.1.529.2.86.1.1.48.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.48.2` | `B.1.1.529.2.86.1.1.48.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.48.2` | `B.1.1.529.2.86.1.1.48.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.48.3` | `B.1.1.529.2.86.1.1.48.3` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`MB.1.1` | `B.1.1.529.2.86.1.1.49.1 .1.1` | [⚑ 512](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/512?closed=1) | [#1659](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1659) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:182](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A182), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [S:22](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A22), [FViRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FViRT) | 2nd `JN.1.5` | `B.1.1.529.2.86.1.1.5` | [⚑ 829](https://github.com/cov-lineages/pango-designation/milestone/829?closed=1) | [#2419](https://github.com/cov-lineages/pango-designation/issues/2419) | | main `JN.1.5` | `B.1.1.529.2.86.1.1.5` | [⚑ 381](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/381?closed=1) | [#1143](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1143) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [NSP13](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP13) | 2nd +`ME.1` | `B.1.1.529.2.86.1.1.50.2 .1` | [⚑ 518](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/518?closed=1) | [#1657](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1657) | [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [JN.1.50](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%2E50) | 2nd `JN.1.55.1` | `B.1.1.529.2.86.1.1.55.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.55.2` | `B.1.1.529.2.86.1.1.55.2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.57.1` | `B.1.1.529.2.86.1.1.57.1` | [⚑ 497](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/497?closed=1) | [#1460](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1460) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60) | 2nd -`JN.1.6.1` | `B.1.1.529.2.86.1.1.6.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.6.1` | `B.1.1.529.2.86.1.1.6.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.62` | `B.1.1.529.2.86.1.1.62` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.63` | `B.1.1.529.2.86.1.1.63` | [⚑ 532](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/532?closed=1) | [#1513 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1513) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:153](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A153), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd +`JN.1.63.1` | `B.1.1.529.2.86.1.1.63.1` | [⚑ 532](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/532?closed=1) | [#1513 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1513) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:153](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A153), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd +`JN.1.65` | `B.1.1.529.2.86.1.1.65` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7` | `B.1.1.529.2.86.1.1.7` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7.1` | `B.1.1.529.2.86.1.1.7.1` | [⚑ 420](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/420?closed=1) | [#1371](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1371) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7.3` | `B.1.1.529.2.86.1.1.7.3` | [⚑ 452](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/452?closed=1) | [#1343 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1343) | [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd `JN.1.7.4` | `B.1.1.529.2.86.1.1.7.4` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.7.5` | `B.1.1.529.2.86.1.1.7.5` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Lineage defining mutation further mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Lineage%20defining%20mutation%20further%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd `LK.1` | `B.1.1.529.2.86.1.1.7.5 .1` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Lineage defining mutation further mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Lineage%20defining%20mutation%20further%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd +`LK.2.1` | `B.1.1.529.2.86.1.1.7.5 .2.1` | [⚑ 517](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/517?closed=1) | [#1679](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1679) | [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [2nuc mutation](https://github.com/sars-cov-2-variants/lineage-proposals/labels/2nuc%20mutation), [S:1150](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1150), [S:547](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A547) | 2nd +`JN.1.7.9` | `B.1.1.529.2.86.1.1.7.9` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.8.1` | `B.1.1.529.2.86.1.1.8.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`JN.1.8.2` | `B.1.1.529.2.86.1.1.8.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.8.2` | `B.1.1.529.2.86.1.1.8.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 833](https://github.com/cov-lineages/pango-designation/milestone/833?closed=1) | [#2410](https://github.com/cov-lineages/pango-designation/issues/2410) | | main `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 387](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/387?closed=1) | [#1096](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1096) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.9.1` | `B.1.1.529.2.86.1.1.9.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`LB.1` | `B.1.1.529.2.86.1.1.9.2 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LB.1.2.1` | `B.1.1.529.2.86.1.1.9.2 .1.2.1` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd -`LB.1.5` | `B.1.1.529.2.86.1.1.9.2 .1.5` | [⚑ 489](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/489?closed=1) | [#1557](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1557) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [2nuc mutation](https://github.com/sars-cov-2-variants/lineage-proposals/labels/2nuc%20mutation), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1` | `B.1.1.529.2.86.1.1.9.2 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LB.1.2.1` | `B.1.1.529.2.86.1.1.9.2 .1.2.1` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1.3.1` | `B.1.1.529.2.86.1.1.9.2 .1.3.1` | [⚑ 509](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/509?closed=1) | [#1620](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1620) | [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1.5` | `B.1.1.529.2.86.1.1.9.2 .1.5` | [⚑ 489](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/489?closed=1) | [#1557](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1557) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [2nuc mutation](https://github.com/sars-cov-2-variants/lineage-proposals/labels/2nuc%20mutation), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1.7.1` | `B.1.1.529.2.86.1.1.9.2 .1.7.1` | [⚑ 530](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/530?closed=1) | [#1641](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1641) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [S:148](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A148), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`LB.1.7.3` | `B.1.1.529.2.86.1.1.9.2 .1.7.3` | [⚑ 531](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/531?closed=1) | [#1555 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1555) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [NSP3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP3), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1), [S:34](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A34) | 2nd `JN.10` | `B.1.1.529.2.86.1.10` | [⚑ 234](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/234?closed=1) | [#954](https://github.com/sars-cov-2-variants/lineage-proposals/issues/954) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [S:475](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A475), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86) | 2nd `JN.11` | `B.1.1.529.2.86.1.11` | [⚑ 404](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/404?closed=1) | [#1303](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1303) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd `JN.11.1` | `B.1.1.529.2.86.1.11.1` | [⚑ 404](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/404?closed=1) | [#1303](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1303) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd @@ -444,7 +474,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JQ.1` | `B.1.1.529.2.86.3.1` | [⚑ 144](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/144?closed=1) | [#906](https://github.com/sars-cov-2-variants/lineage-proposals/issues/906) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:95](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A95) | 2nd `JQ.2` | `B.1.1.529.2.86.3.2` | [⚑ 426](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/426?closed=1) | [#1373](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1373) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd `JQ.2.1` | `B.1.1.529.2.86.3.2.1` | [⚑ 426](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/426?closed=1) | [#1373](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1373) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd -`JQ.2.1.1` | `B.1.1.529.2.86.3.2.1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JQ.2.1.1` | `B.1.1.529.2.86.3.2.1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `BA.2.86.4` | `B.1.1.529.2.86.4` | [⚑ 233](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/233?closed=1) | [#1032](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1032) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:222](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A222) | 2nd `BA.2.9` | `B.1.1.529.2.9` | [⚑ 236](https://github.com/cov-lineages/pango-designation/milestone/236?closed=1) | [#432](https://github.com/cov-lineages/pango-designation/issues/432) | https://github.com/cov-lineages/pango-designation/labels/designated | main `BA.2.9.1` | `B.1.1.529.2.9.1` | [⚑ 250](https://github.com/cov-lineages/pango-designation/milestone/250?closed=1) | [#530](https://github.com/cov-lineages/pango-designation/issues/530) | https://github.com/cov-lineages/pango-designation/labels/designated | main @@ -1492,7 +1522,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `XDT` | `XDT` | [⚑ 416](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/416?closed=1) | [#1183](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1183) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:174](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A174), [XDT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDT) | 2nd `XDU` | `XDU` | [⚑ 448](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/448?closed=1) | [#1084](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1084) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [XDU](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDU) | 2nd `XDW` | `XDW` | [⚑ 458](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/458?closed=1) | [#1471](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1471) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [recombinant squared](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant%20squared), [S:701](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A701), [XDW](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDW) | 2nd -`XDY` | `XDY` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`XDY` | `XDY` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd `XDZ` | `XDZ` | [⚑ 504](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/504?closed=1) | [#1356 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1356) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [Small clusters ??](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Small%20clusters%20%3F%3F), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike), [XDZ](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDZ) | 2nd `XE` | `XE` | [⚑ 220](https://github.com/cov-lineages/pango-designation/milestone/220?closed=1) | [#454](https://github.com/cov-lineages/pango-designation/issues/454) | https://github.com/cov-lineages/pango-designation/labels/designated | main `XEB` | `XEB` | [⚑ 501](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/501?closed=1) | [#1290](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1290) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [recombinant squared](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant%20squared), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd diff --git a/scripts/issue-milestone-collector/data/mappings.json b/scripts/issue-milestone-collector/data/mappings.json index 975610ef..864c8447 100644 --- a/scripts/issue-milestone-collector/data/mappings.json +++ b/scripts/issue-milestone-collector/data/mappings.json @@ -1,4 +1,16 @@ { + "": [ + { + "pango": "", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "" + } + ], "A.2.5.1": [ { "pango": "A.2.5.1", @@ -3351,7 +3363,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.1.3" @@ -3385,7 +3397,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.1.5" @@ -3551,12 +3563,24 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1" } ], + "B.1.1.529.2.86.1.1.11.1.1.1.1.1": [ + { + "pango": "MG.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 521, + "issue": 1623, + "labels": "designated, s:182, S:679, S:572, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.1.1" + } + ], "B.1.1.529.2.86.1.1.11.1.1.1.2": [ { "pango": "KP.1.1.2", @@ -3569,28 +3593,28 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.2" } ], - "B.1.1.529.2.86.1.1.11.1.1.1.3": [ + "B.1.1.529.2.86.1.1.11.1.1.1.3.1": [ { - "pango": "KP.1.1.3", + "pango": "LP.1", "repo": "sars-cov-2-variants/lineage-proposals", - "milestone": 485, - "issue": 1502, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", + "milestone": 495, + "issue": 1591, + "labels": "designated, S:1229, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", - "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3" + "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3.1" } ], - "B.1.1.529.2.86.1.1.11.1.1.1.3.1": [ + "B.1.1.529.2.86.1.1.11.1.1.1.3.1.1": [ { - "pango": "LP.1", + "pango": "LP.1.1", "repo": "sars-cov-2-variants/lineage-proposals", - "milestone": 495, - "issue": 1591, - "labels": "designated, S:1229, DeFlirt", + "milestone": 513, + "issue": 1633, + "labels": "S.1229, S:255, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", - "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3.1" + "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3.1.1" } ], "B.1.1.529.2.86.1.1.11.1.1.1.4": [ @@ -3623,7 +3647,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2" @@ -3707,7 +3731,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 455, "issue": 1459, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFlirt", + "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2.3" @@ -3725,6 +3749,30 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.2.3.1" } ], + "B.1.1.529.2.86.1.1.11.1.2.3.3": [ + { + "pango": "KP.2.3.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 516, + "issue": 1618, + "labels": "To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.2.3.3" + } + ], + "B.1.1.529.2.86.1.1.11.1.2.3.4": [ + { + "pango": "KP.2.3.4", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 510, + "issue": 1596, + "labels": "Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.2.3.4" + } + ], "B.1.1.529.2.86.1.1.11.1.2.4": [ { "pango": "KP.2.4", @@ -3767,7 +3815,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2.9" @@ -3797,6 +3845,18 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.1" } ], + "B.1.1.529.2.86.1.1.11.1.3.1.1.1": [ + { + "pango": "MC.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 507, + "issue": 1638, + "labels": "designated, S:572, S:31, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.1.1" + } + ], "B.1.1.529.2.86.1.1.11.1.3.1.2": [ { "pango": "KP.3.1.2", @@ -3815,9 +3875,9 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 493, "issue": 1576, - "labels": "Multiple lineages, designated, S:31, KP.3", + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", "state": "OPEN", - "reason": null, + "reason": "REOPENED", "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.3" } ], @@ -3833,6 +3893,30 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.4" } ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.1": [ + { + "pango": "MM.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 527, + "issue": 1624, + "labels": "designated, S:680, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.4.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.2": [ + { + "pango": "MM.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 526, + "issue": 1716, + "labels": "S:185, S:35, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.4.2" + } + ], "B.1.1.529.2.86.1.1.11.1.3.1.5": [ { "pango": "KP.3.1.5", @@ -3845,6 +3929,30 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.5" } ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.1": [ + { + "pango": "MK.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 523, + "issue": 1605, + "labels": "To be proposed, S:31, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.6.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.2": [ + { + "pango": "MK.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 524, + "issue": 1606, + "labels": "To be proposed, Emerged in an undersampled area, Mutations outside spike, designated, KP.3, S:745", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.6.2" + } + ], "B.1.1.529.2.86.1.1.11.1.3.2.1": [ { "pango": "KP.3.2.1", @@ -3881,13 +3989,73 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.3" } ], + "B.1.1.529.2.86.1.1.11.1.3.3.1": [ + { + "pango": "KP.3.3.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 508, + "issue": 1651, + "labels": "Rapid review needed, High local prevalence, designated, KP.3, S:547", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.3.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.2": [ + { + "pango": "KP.3.3.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 522, + "issue": 1673, + "labels": "Apparently slow, designated, ORF9b, S:435, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.3.2" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.3.1": [ + { + "pango": "ML.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 525, + "issue": 1683, + "labels": "To be proposed, High local prevalence, designated, S:681, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.3.3.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.4.1": [ + { + "pango": "KP.3.4.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 493, + "issue": 1576, + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", + "state": "OPEN", + "reason": "REOPENED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.4.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.5": [ + { + "pango": "KP.3.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 529, + "issue": 1630, + "labels": "designated, s:213, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.5" + } + ], "B.1.1.529.2.86.1.1.11.1.4.1": [ { "pango": "KP.4.1", "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.4.1" @@ -3911,7 +4079,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.4.2" @@ -3977,6 +4145,18 @@ "unaliased": "B.1.1.529.2.86.1.1.13.1.1.1" } ], + "B.1.1.529.2.86.1.1.13.1.1.3": [ + { + "pango": "KS.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 520, + "issue": 1535, + "labels": "High local prevalence, Small clusters ??, designated, FLiRT, S:642", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.13.1.1.3" + } + ], "B.1.1.529.2.86.1.1.15.1": [ { "pango": "JN.1.15.1", @@ -3995,12 +4175,24 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.15.1.1" } ], + "B.1.1.529.2.86.1.1.15.1.2": [ + { + "pango": "LU.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 515, + "issue": 1652, + "labels": "High local prevalence, designated, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.15.1.2" + } + ], "B.1.1.529.2.86.1.1.16": [ { "pango": "JN.1.16", @@ -4019,7 +4211,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.16.1" @@ -4049,28 +4241,52 @@ "unaliased": "B.1.1.529.2.86.1.1.16.1.1.1.1" } ], - "B.1.1.529.2.86.1.1.16.1.2": [ + "B.1.1.529.2.86.1.1.16.1.3.1": [ { - "pango": "LF.2", + "pango": "LF.3.1", "repo": "sars-cov-2-variants/lineage-proposals", - "milestone": 485, - "issue": 1502, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", + "milestone": 490, + "issue": 1558, + "labels": "designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745", "state": "CLOSED", "reason": "COMPLETED", - "unaliased": "B.1.1.529.2.86.1.1.16.1.2" + "unaliased": "B.1.1.529.2.86.1.1.16.1.3.1" } ], - "B.1.1.529.2.86.1.1.16.1.3.1": [ + "B.1.1.529.2.86.1.1.16.1.3.1.1": [ { - "pango": "LF.3.1", + "pango": "LF.3.1.1", "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 490, "issue": 1558, "labels": "designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745", "state": "CLOSED", "reason": "COMPLETED", - "unaliased": "B.1.1.529.2.86.1.1.16.1.3.1" + "unaliased": "B.1.1.529.2.86.1.1.16.1.3.1.1" + } + ], + "B.1.1.529.2.86.1.1.16.1.4.1": [ + { + "pango": "LF.4.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 514, + "issue": 1590, + "labels": "To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.16.1.4.1" + } + ], + "B.1.1.529.2.86.1.1.16.1.5": [ + { + "pango": "LF.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 519, + "issue": 1627, + "labels": "designated, S:185, FLiRT, S:33", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.16.1.5" } ], "B.1.1.529.2.86.1.1.16.2": [ @@ -4103,7 +4319,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.16.2.2" @@ -4115,7 +4331,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.18" @@ -4193,6 +4409,18 @@ "unaliased": "B.1.1.529.2.86.1.1.18.3" } ], + "B.1.1.529.2.86.1.1.18.3.1": [ + { + "pango": "MA.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 511, + "issue": 1635, + "labels": "To be proposed, designated, S:190, N Glycan, DeFViRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.18.3.1" + } + ], "B.1.1.529.2.86.1.1.18.4": [ { "pango": "JN.1.18.4", @@ -4211,7 +4439,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.18.5" @@ -4283,7 +4511,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.24.1" @@ -4295,7 +4523,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.25.1.1" @@ -4307,7 +4535,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.26" @@ -4403,7 +4631,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.30.1" @@ -4415,7 +4643,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.30.1.2" @@ -4445,18 +4673,6 @@ "unaliased": "B.1.1.529.2.86.1.1.32.1" } ], - "B.1.1.529.2.86.1.1.33": [ - { - "pango": "JN.1.33", - "repo": "sars-cov-2-variants/lineage-proposals", - "milestone": 435, - "issue": 1395, - "labels": "To be proposed, Emerged in an undersampled area, High local prevalence, JN.1, S:67", - "state": "CLOSED", - "reason": "COMPLETED", - "unaliased": "B.1.1.529.2.86.1.1.33" - } - ], "B.1.1.529.2.86.1.1.35": [ { "pango": "JN.1.35", @@ -4499,12 +4715,24 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.39.1" } ], + "B.1.1.529.2.86.1.1.39.3": [ + { + "pango": "JN.1.39.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 435, + "issue": 1395, + "labels": "To be proposed, Emerged in an undersampled area, High local prevalence, JN.1, S:67", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.39.3" + } + ], "B.1.1.529.2.86.1.1.4": [ { "pango": "JN.1.4", @@ -4581,7 +4809,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.4.4" @@ -4629,7 +4857,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.4.7.1" @@ -4641,7 +4869,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.4.7.1.1" @@ -4761,12 +4989,36 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.48.2" } ], + "B.1.1.529.2.86.1.1.48.3": [ + { + "pango": "JN.1.48.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.48.3" + } + ], + "B.1.1.529.2.86.1.1.49.1.1.1": [ + { + "pango": "MB.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 512, + "issue": 1659, + "labels": "designated, s:182, S:31, S:22, FViRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.49.1.1.1" + } + ], "B.1.1.529.2.86.1.1.5": [ { "pango": "JN.1.5", @@ -4789,6 +5041,18 @@ "unaliased": "B.1.1.529.2.86.1.1.5" } ], + "B.1.1.529.2.86.1.1.50.2.1": [ + { + "pango": "ME.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 518, + "issue": 1657, + "labels": "S:346, JN.1.50", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.50.2.1" + } + ], "B.1.1.529.2.86.1.1.55.1": [ { "pango": "JN.1.55.1", @@ -4831,7 +5095,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.6.1" @@ -4849,6 +5113,42 @@ "unaliased": "B.1.1.529.2.86.1.1.62" } ], + "B.1.1.529.2.86.1.1.63": [ + { + "pango": "JN.1.63", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED", + "unaliased": "B.1.1.529.2.86.1.1.63" + } + ], + "B.1.1.529.2.86.1.1.63.1": [ + { + "pango": "JN.1.63.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED", + "unaliased": "B.1.1.529.2.86.1.1.63.1" + } + ], + "B.1.1.529.2.86.1.1.65": [ + { + "pango": "JN.1.65", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 389, + "issue": 1097, + "labels": "To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.65" + } + ], "B.1.1.529.2.86.1.1.7": [ { "pango": "JN.1.7", @@ -4921,6 +5221,30 @@ "unaliased": "B.1.1.529.2.86.1.1.7.5.1" } ], + "B.1.1.529.2.86.1.1.7.5.2.1": [ + { + "pango": "LK.2.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 517, + "issue": 1679, + "labels": "S:346, S:455, S:572, 2nuc mutation, S:1150, S:547", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.7.5.2.1" + } + ], + "B.1.1.529.2.86.1.1.7.9": [ + { + "pango": "JN.1.7.9", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.7.9" + } + ], "B.1.1.529.2.86.1.1.8.1": [ { "pango": "JN.1.8.1", @@ -4939,7 +5263,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.8.2" @@ -4985,7 +5309,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.9.2.1" @@ -4997,24 +5321,60 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.9.2.1.2.1" } ], + "B.1.1.529.2.86.1.1.9.2.1.3.1": [ + { + "pango": "LB.1.3.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 509, + "issue": 1620, + "labels": "S:445, DeFLiRT, LB.1", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.9.2.1.3.1" + } + ], "B.1.1.529.2.86.1.1.9.2.1.5": [ { "pango": "LB.1.5", "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 489, "issue": 1557, - "labels": "designated, 2nuc mutation, s:1143, DeFlirt, LB.1", + "labels": "designated, 2nuc mutation, s:1143, DeFLiRT, LB.1", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.9.2.1.5" } ], + "B.1.1.529.2.86.1.1.9.2.1.7.1": [ + { + "pango": "LB.1.7.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 530, + "issue": 1641, + "labels": "Rapid review needed, designated, S:183, S:148, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.9.2.1.7.1" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.7.3": [ + { + "pango": "LB.1.7.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 531, + "issue": 1555, + "labels": "Apparently slow, designated, NSP3, DeFLiRT, LB.1, S:34", + "state": "CLOSED", + "reason": "NOT_PLANNED", + "unaliased": "B.1.1.529.2.86.1.1.9.2.1.7.3" + } + ], "B.1.1.529.2.86.1.10": [ { "pango": "JN.10", @@ -5301,7 +5661,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.3.2.1.1" @@ -17773,7 +18133,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "XDY" diff --git a/scripts/issue-milestone-collector/data/mappings.tsv b/scripts/issue-milestone-collector/data/mappings.tsv index 6063d24e..ed3540b5 100644 --- a/scripts/issue-milestone-collector/data/mappings.tsv +++ b/scripts/issue-milestone-collector/data/mappings.tsv @@ -1,4 +1,5 @@ PANGO REPO MILESTONE ISSUE LABELS STATE REASON UNALIASED + sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN A.2.5.1 cov-lineages/pango-designation 25 33 designated CLOSED COMPLETED A.2.5.1 A.2.5.3 cov-lineages/pango-designation 89 168 designated CLOSED COMPLETED A.2.5.3 A.27 cov-lineages/pango-designation 6 11 designated CLOSED COMPLETED A.27 @@ -279,10 +280,10 @@ BA.2.86 cov-lineages/pango-designation 803 2183 designated, BA.2, Saltation CLOS JN.1.1 sars-cov-2-variants/lineage-proposals 378 987 Multiple lineages, designated, S:455, BA.2.86, Orf6, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.1 JN.1.1.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.1.1 JN.1.1.2 sars-cov-2-variants/lineage-proposals 382 1147 S:456, Apparently slow, partially designated, BA.2.86, JN.1, S:181, SLip CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.1.2 -JN.1.1.3 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.3 +JN.1.1.3 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.3 JN.1.1.4 cov-lineages/pango-designation 843 2476 CLOSED COMPLETED B.1.1.529.2.86.1.1.1.4 JN.1.1.4 sars-cov-2-variants/lineage-proposals 417 1259 designated, S:455, BA.2.86, S:1264, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.1.4 -JN.1.1.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.5 +JN.1.1.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.5 KR.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.1.5.1 KR.1.1 sars-cov-2-variants/lineage-proposals 488 1545 designated, ORF9b, S:59, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.5.1.1 KR.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.1.5.2 @@ -296,70 +297,88 @@ JN.1.11 cov-lineages/pango-designation 834 2446 CLOSED COMPLETED B.1.1.529.2.86 JN.1.11 sars-cov-2-variants/lineage-proposals 400 1262 designated, S:455, JN.1, S:1104 CLOSED COMPLETED B.1.1.529.2.86.1.1.11 JN.1.11.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.11.1 KP.1 sars-cov-2-variants/lineage-proposals 419 1364 S:456, Emerged in an undersampled area, designated, JN.1, S:1104, S:1086 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1 -KP.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1 +KP.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1 +MG.1 sars-cov-2-variants/lineage-proposals 521 1623 designated, s:182, S:679, S:572, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.1.1 KP.1.1.2 sars-cov-2-variants/lineage-proposals 473 1541 To be proposed, S:1162, S:1104, S:1086, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.2 -KP.1.1.3 sars-cov-2-variants/lineage-proposals 485 1502 To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3 -LP.1 sars-cov-2-variants/lineage-proposals 495 1591 designated, S:1229, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1 +LP.1 sars-cov-2-variants/lineage-proposals 495 1591 designated, S:1229, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1 +LP.1.1 sars-cov-2-variants/lineage-proposals 513 1633 S.1229, S:255, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1.1 KP.1.1.4 sars-cov-2-variants/lineage-proposals 494 1593 High local prevalence, designated, S:214, S:1104, S:1086, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.4 KP.1.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.2 -KP.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2 +KP.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2 KP.2.1 sars-cov-2-variants/lineage-proposals 439 1440 Emerged in an undersampled area, designated, Double Nuc mutations, S:1104, s:1201, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.1 KP.2.10 sars-cov-2-variants/lineage-proposals 469 1553 designated, S:59, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.10 KP.2.11 sars-cov-2-variants/lineage-proposals 470 1520 Small clusters ??, designated, KP.2, S:56 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.11 KP.2.12 sars-cov-2-variants/lineage-proposals 472 1550 designated, S:1176, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.12 KP.2.14 sars-cov-2-variants/lineage-proposals 481 1578 Rapid review needed, S:184, S:31, S:22, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.14 KP.2.2 sars-cov-2-variants/lineage-proposals 438 1446 Rapid review needed, designated, S:59, FLiRT, s:1266 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.2 -KP.2.3 sars-cov-2-variants/lineage-proposals 455 1459 To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3 +KP.2.3 sars-cov-2-variants/lineage-proposals 455 1459 To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3 KP.2.3.1 sars-cov-2-variants/lineage-proposals 471 1548 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.1 +KP.2.3.3 sars-cov-2-variants/lineage-proposals 516 1618 To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.3 +KP.2.3.4 sars-cov-2-variants/lineage-proposals 510 1596 Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.4 KP.2.4 sars-cov-2-variants/lineage-proposals 466 1524 designated, S:250, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.4 KP.2.5 sars-cov-2-variants/lineage-proposals 467 1527 Apparently slow, designated, S:185, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.5 KP.2.8 sars-cov-2-variants/lineage-proposals 468 1546 designated, S:60, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.8 -KP.2.9 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.9 +KP.2.9 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.9 KP.3 sars-cov-2-variants/lineage-proposals 434 1410 S:456, Emerged in an undersampled area, designated, S:493, JN.1, S:1104 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3 KP.3.1.1 sars-cov-2-variants/lineage-proposals 480 1563 To be proposed, Deletions/Truncations/Frameshifted, designated, S:31, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.1 +MC.1 sars-cov-2-variants/lineage-proposals 507 1638 designated, S:572, S:31, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.1.1 KP.3.1.2 sars-cov-2-variants/lineage-proposals 491 1589 S:151, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.2 -KP.3.1.3 sars-cov-2-variants/lineage-proposals 493 1576 Multiple lineages, designated, S:31, KP.3 OPEN B.1.1.529.2.86.1.1.11.1.3.1.3 +KP.3.1.3 sars-cov-2-variants/lineage-proposals 493 1576 Rapid review needed, Multiple lineages, designated, S:31, KP.3 OPEN REOPENED B.1.1.529.2.86.1.1.11.1.3.1.3 KP.3.1.4 sars-cov-2-variants/lineage-proposals 492 1562 To be proposed, Mutations outside spike, designated, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.4 +MM.1 sars-cov-2-variants/lineage-proposals 527 1624 designated, S:680, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.4.1 +MM.2 sars-cov-2-variants/lineage-proposals 526 1716 S:185, S:35, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.4.2 KP.3.1.5 sars-cov-2-variants/lineage-proposals 506 1614 designated, S:556, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.5 +MK.1 sars-cov-2-variants/lineage-proposals 523 1605 To be proposed, S:31, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.6.1 +MK.2 sars-cov-2-variants/lineage-proposals 524 1606 To be proposed, Emerged in an undersampled area, Mutations outside spike, designated, KP.3, S:745 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.6.2 KP.3.2.1 sars-cov-2-variants/lineage-proposals 487 1556 designated, S:31, KP.3, S:263 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.2.1 KP.3.2.5 sars-cov-2-variants/lineage-proposals 499 1604 designated CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.2.5 KP.3.3 sars-cov-2-variants/lineage-proposals 475 1531 To be proposed, ORF9b, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3 -KP.4.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.1 +KP.3.3.1 sars-cov-2-variants/lineage-proposals 508 1651 Rapid review needed, High local prevalence, designated, KP.3, S:547 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3.1 +KP.3.3.2 sars-cov-2-variants/lineage-proposals 522 1673 Apparently slow, designated, ORF9b, S:435, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3.2 +ML.1 sars-cov-2-variants/lineage-proposals 525 1683 To be proposed, High local prevalence, designated, S:681, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3.3.1 +KP.3.4.1 sars-cov-2-variants/lineage-proposals 493 1576 Rapid review needed, Multiple lineages, designated, S:31, KP.3 OPEN REOPENED B.1.1.529.2.86.1.1.11.1.3.4.1 +KP.3.5 sars-cov-2-variants/lineage-proposals 529 1630 designated, s:213, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.5 +KP.4.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.1 KP.4.1.2 sars-cov-2-variants/lineage-proposals 505 1611 designated, FLiRT, S:441 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.1.2 -KP.4.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.2 +KP.4.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.2 KP.5 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.5 JN.1.12 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.12 JN.1.13 cov-lineages/pango-designation 844 2464 CLOSED COMPLETED B.1.1.529.2.86.1.1.13 KS.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.13.1.1 KS.1.1 sars-cov-2-variants/lineage-proposals 482 1565 N Glycan, S:22, S:59, S:1087, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.13.1.1.1 +KS.1.3 sars-cov-2-variants/lineage-proposals 520 1535 High local prevalence, Small clusters ??, designated, FLiRT, S:642 CLOSED COMPLETED B.1.1.529.2.86.1.1.13.1.1.3 JN.1.15.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.15.1 -LU.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.15.1.1 +LU.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.15.1.1 +LU.2 sars-cov-2-variants/lineage-proposals 515 1652 High local prevalence, designated, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.15.1.2 JN.1.16 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16 -JN.1.16.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1 +JN.1.16.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1 LF.1.1 sars-cov-2-variants/lineage-proposals 474 1448 To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.1.1 LF.1.1.1 sars-cov-2-variants/lineage-proposals 474 1448 To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.1.1.1 -LF.2 sars-cov-2-variants/lineage-proposals 485 1502 To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.2 LF.3.1 sars-cov-2-variants/lineage-proposals 490 1558 designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745 CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.3.1 +LF.3.1.1 sars-cov-2-variants/lineage-proposals 490 1558 designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745 CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.3.1.1 +LF.4.1 sars-cov-2-variants/lineage-proposals 514 1590 To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.4.1 +LF.5 sars-cov-2-variants/lineage-proposals 519 1627 designated, S:185, FLiRT, S:33 CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.5 JN.1.16.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16.2 LA.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16.2.1 -LA.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.2.2 -JN.1.18 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18 +LA.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.2.2 +JN.1.18 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18 JN.1.18.1 sars-cov-2-variants/lineage-proposals 431 1414 designated, S:346, JN.1, S:250 CLOSED COMPLETED B.1.1.529.2.86.1.1.18.1 LQ.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.1.1 LQ.1.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.1.1.1 LQ.2 sars-cov-2-variants/lineage-proposals 431 1414 designated, S:346, JN.1, S:250 CLOSED COMPLETED B.1.1.529.2.86.1.1.18.1.2 JN.1.18.2 sars-cov-2-variants/lineage-proposals 441 1441 Convergent evolution, designated, S:346, S:59 CLOSED COMPLETED B.1.1.529.2.86.1.1.18.2 JN.1.18.3 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.3 +MA.1 sars-cov-2-variants/lineage-proposals 511 1635 To be proposed, designated, S:190, N Glycan, DeFViRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18.3.1 JN.1.18.4 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.4 -JN.1.18.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18.5 +JN.1.18.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18.5 JN.1.2 sars-cov-2-variants/lineage-proposals 267 1087 designated, BA.2.86, S:1229, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.2 JN.1.2.1 sars-cov-2-variants/lineage-proposals 409 1322 designated, S:1229, JN.1, S:1101 CLOSED COMPLETED B.1.1.529.2.86.1.1.2.1 JN.1.21 sars-cov-2-variants/lineage-proposals 415 1162 To be proposed, Multiple lineages, designated, BA.2.86, JN.1, S:1058 CLOSED COMPLETED B.1.1.529.2.86.1.1.21 JN.1.23 cov-lineages/pango-designation 845 2488 CLOSED COMPLETED B.1.1.529.2.86.1.1.23 JN.1.23.1 sars-cov-2-variants/lineage-proposals 486 1552 S:1264, NSP3, JN.1.23, S:137 CLOSED COMPLETED B.1.1.529.2.86.1.1.23.1 -JN.1.24.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.24.1 -LM.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.25.1.1 -JN.1.26 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.26 +JN.1.24.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.24.1 +LM.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.25.1.1 +JN.1.26 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.26 JN.1.27 sars-cov-2-variants/lineage-proposals 429 1403 designated, S:153, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.27 JN.1.28.1 sars-cov-2-variants/lineage-proposals 447 1244 Rapid review needed, S:456, designated, combo, PLPro, S:t572I CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1 KW.1 sars-cov-2-variants/lineage-proposals 447 1244 Rapid review needed, S:456, designated, combo, PLPro, S:t572I CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1.1 @@ -367,27 +386,27 @@ KW.1.1 sars-cov-2-variants/lineage-proposals 447 1244 Rapid review needed, S:456 KW.1.1.1 sars-cov-2-variants/lineage-proposals 476 1504 designated, S:95, Convergent Trio 346/456/572, FLIRT combo CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1.1.1.1 LG.1 sars-cov-2-variants/lineage-proposals 476 1504 designated, S:95, Convergent Trio 346/456/572, FLIRT combo CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1.1.1.1.1 JN.1.29.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.29.1 -JN.1.30.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1 -KU.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1.2 +JN.1.30.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1 +KU.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1.2 JN.1.31 sars-cov-2-variants/lineage-proposals 432 1319 designated, Branch, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.31 JN.1.32.1 sars-cov-2-variants/lineage-proposals 456 1442 S:183, S:572 CLOSED COMPLETED B.1.1.529.2.86.1.1.32.1 -JN.1.33 sars-cov-2-variants/lineage-proposals 435 1395 To be proposed, Emerged in an undersampled area, High local prevalence, JN.1, S:67 CLOSED COMPLETED B.1.1.529.2.86.1.1.33 JN.1.35 sars-cov-2-variants/lineage-proposals 437 1362 designated, FCS, JN.1, S:680 CLOSED COMPLETED B.1.1.529.2.86.1.1.35 JN.1.36 sars-cov-2-variants/lineage-proposals 443 1326 designated, s:677, FCS, JN.1, S:680 CLOSED COMPLETED B.1.1.529.2.86.1.1.36 JN.1.36.1 sars-cov-2-variants/lineage-proposals 443 1326 designated, s:677, FCS, JN.1, S:680 CLOSED COMPLETED B.1.1.529.2.86.1.1.36.1 -JN.1.39.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.39.1 +JN.1.39.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.39.1 +JN.1.39.3 sars-cov-2-variants/lineage-proposals 435 1395 To be proposed, Emerged in an undersampled area, High local prevalence, JN.1, S:67 CLOSED COMPLETED B.1.1.529.2.86.1.1.39.3 JN.1.4 sars-cov-2-variants/lineage-proposals 378 987 Multiple lineages, designated, S:455, BA.2.86, Orf6, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4 JN.1.4.1 sars-cov-2-variants/lineage-proposals 408 1175 designated, S:654, BA.2.86, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.1 JN.1.4.2 cov-lineages/pango-designation 839 2462 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.2 JN.1.4.2 sars-cov-2-variants/lineage-proposals 413 1180 To be proposed, designated, S:455, BA.2.86, S:185, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.2 LL.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.4.2.1 JN.1.4.3 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.3 -JN.1.4.4 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.4 +JN.1.4.4 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.4 JN.1.4.5 sars-cov-2-variants/lineage-proposals 430 1171 To be proposed, designated, BA.2.86, JN.1 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.4.5 KV.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.5.2 JN.1.4.6 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.6 -LE.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1 -LE.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1.1 +LE.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1 +LE.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1.1 LE.1.3.1 sars-cov-2-variants/lineage-proposals 503 1612 designated, S:84, S:173, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1.3.1 JN.1.4.8 sars-cov-2-variants/lineage-proposals 496 1495 To be proposed, designated, S:60 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.8 JN.1.40 sars-cov-2-variants/lineage-proposals 442 1451 Emerged in an undersampled area, designated, S:31, S:58 CLOSED COMPLETED B.1.1.529.2.86.1.1.40 @@ -397,28 +416,39 @@ JN.1.44 sars-cov-2-variants/lineage-proposals 378 987 Multiple lineages, designa JN.1.47.1 sars-cov-2-variants/lineage-proposals 457 1318 Apparently slow, designated, S:455, JN.1, S:221 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.47.1 JN.1.47.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.47.2 JN.1.48.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.48.1 -JN.1.48.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.48.2 +JN.1.48.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.48.2 +JN.1.48.3 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.48.3 +MB.1.1 sars-cov-2-variants/lineage-proposals 512 1659 designated, s:182, S:31, S:22, FViRT CLOSED COMPLETED B.1.1.529.2.86.1.1.49.1.1.1 JN.1.5 cov-lineages/pango-designation 829 2419 CLOSED COMPLETED B.1.1.529.2.86.1.1.5 JN.1.5 sars-cov-2-variants/lineage-proposals 381 1143 High local prevalence, designated, Double Nuc mutations, BA.2.86, JN.1, NSP13 CLOSED COMPLETED B.1.1.529.2.86.1.1.5 +ME.1 sars-cov-2-variants/lineage-proposals 518 1657 S:346, JN.1.50 CLOSED COMPLETED B.1.1.529.2.86.1.1.50.2.1 JN.1.55.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.55.1 JN.1.55.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.55.2 JN.1.57.1 sars-cov-2-variants/lineage-proposals 497 1460 designated, S:60 CLOSED COMPLETED B.1.1.529.2.86.1.1.57.1 -JN.1.6.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.6.1 +JN.1.6.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.6.1 JN.1.62 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.62 +JN.1.63 sars-cov-2-variants/lineage-proposals 532 1513 Apparently slow, designated, S:153, S:680 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.63 +JN.1.63.1 sars-cov-2-variants/lineage-proposals 532 1513 Apparently slow, designated, S:153, S:680 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.63.1 +JN.1.65 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.65 JN.1.7 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.7 JN.1.7.1 sars-cov-2-variants/lineage-proposals 420 1371 designated, S:346, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.1 JN.1.7.3 sars-cov-2-variants/lineage-proposals 452 1343 S:346, S:455, S:572, JN.1, S:680 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.7.3 JN.1.7.4 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.7.4 JN.1.7.5 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Lineage defining mutation further mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5 LK.1 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Lineage defining mutation further mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5.1 +LK.2.1 sars-cov-2-variants/lineage-proposals 517 1679 S:346, S:455, S:572, 2nuc mutation, S:1150, S:547 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5.2.1 +JN.1.7.9 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.7.9 JN.1.8.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.8.1 -JN.1.8.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.8.2 +JN.1.8.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.8.2 JN.1.9 cov-lineages/pango-designation 833 2410 CLOSED COMPLETED B.1.1.529.2.86.1.1.9 JN.1.9 sars-cov-2-variants/lineage-proposals 387 1096 designated, BA.2.86, S:183, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9 JN.1.9.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.1 -LB.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1 -LB.1.2.1 sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.2.1 -LB.1.5 sars-cov-2-variants/lineage-proposals 489 1557 designated, 2nuc mutation, s:1143, DeFlirt, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.5 +LB.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1 +LB.1.2.1 sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.2.1 +LB.1.3.1 sars-cov-2-variants/lineage-proposals 509 1620 S:445, DeFLiRT, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.3.1 +LB.1.5 sars-cov-2-variants/lineage-proposals 489 1557 designated, 2nuc mutation, s:1143, DeFLiRT, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.5 +LB.1.7.1 sars-cov-2-variants/lineage-proposals 530 1641 Rapid review needed, designated, S:183, S:148, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.7.1 +LB.1.7.3 sars-cov-2-variants/lineage-proposals 531 1555 Apparently slow, designated, NSP3, DeFLiRT, LB.1, S:34 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.9.2.1.7.3 JN.10 sars-cov-2-variants/lineage-proposals 234 954 Multiple lineages, designated, partially designated, S:475, BA.2.86 CLOSED COMPLETED B.1.1.529.2.86.1.10 JN.11 sars-cov-2-variants/lineage-proposals 404 1303 Emerged in an undersampled area, designated, S:455, partially designated, BA.2.86, S:1104, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.1.11 JN.11.1 sars-cov-2-variants/lineage-proposals 404 1303 Emerged in an undersampled area, designated, S:455, partially designated, BA.2.86, S:1104, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.1.11.1 @@ -443,7 +473,7 @@ BA.2.86.2 sars-cov-2-variants/lineage-proposals 146 756 designated, BA.2.86 CLOS JQ.1 sars-cov-2-variants/lineage-proposals 144 906 designated, BA.2.86, S:95 CLOSED COMPLETED B.1.1.529.2.86.3.1 JQ.2 sars-cov-2-variants/lineage-proposals 426 1373 designated, S:346, S:455, BA.2.86, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.3.2 JQ.2.1 sars-cov-2-variants/lineage-proposals 426 1373 designated, S:346, S:455, BA.2.86, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.3.2.1 -JQ.2.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.3.2.1.1 +JQ.2.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.3.2.1.1 BA.2.86.4 sars-cov-2-variants/lineage-proposals 233 1032 designated, BA.2.86, S:222 CLOSED COMPLETED B.1.1.529.2.86.4 BA.2.9 cov-lineages/pango-designation 236 432 designated CLOSED COMPLETED B.1.1.529.2.9 BA.2.9.1 cov-lineages/pango-designation 250 530 designated CLOSED COMPLETED B.1.1.529.2.9.1 @@ -1491,7 +1521,7 @@ XDT cov-lineages/pango-designation 840 2485 CLOSED COMPLETED XDT XDT sars-cov-2-variants/lineage-proposals 416 1183 recombinant, designated, BA.2.86, S:174, XDT CLOSED COMPLETED XDT XDU sars-cov-2-variants/lineage-proposals 448 1084 recombinant, designated, BA.2.86, XDU CLOSED COMPLETED XDU XDW sars-cov-2-variants/lineage-proposals 458 1471 recombinant, designated, S:346, recombinant squared, S:701, XDW CLOSED COMPLETED XDW -XDY sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1 CLOSED COMPLETED XDY +XDY sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1 CLOSED COMPLETED XDY XDZ sars-cov-2-variants/lineage-proposals 504 1356 recombinant, Small clusters ??, designated, JN.1 Spike, XDZ CLOSED NOT_PLANNED XDZ XE cov-lineages/pango-designation 220 454 designated CLOSED COMPLETED XE XEB sars-cov-2-variants/lineage-proposals 501 1290 recombinant, recombinant squared, JN.1 Spike CLOSED COMPLETED XEB diff --git a/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json b/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json index 107654fc..d70b9750 100644 --- a/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json +++ b/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json @@ -4707,6 +4707,17 @@ "reason": "COMPLETED" } ], + "B.1.1.529.2.86.1.1.65": [ + { + "pango": "JN.1.65", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 389, + "issue": 1097, + "labels": "To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], "B.1.1.529.2.86.1.2.3": [ { "pango": "JN.2.3", @@ -5158,6 +5169,17 @@ "reason": null } ], + "B.1.1.529.2.86.1.1.7.9": [ + { + "pango": "JN.1.7.9", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], "B.1.1.529.2.86.1.1.48.1": [ { "pango": "JN.1.48.1", @@ -5169,6 +5191,17 @@ "reason": null } ], + "B.1.1.529.2.86.1.1.48.3": [ + { + "pango": "JN.1.48.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], "B.1.1.529.2.86.1.1.18.3": [ { "pango": "JN.1.18.3", @@ -5301,13 +5334,24 @@ "reason": null } ], + "": [ + { + "pango": "", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], "B.1.1.529.2.86.1.1.1.3": [ { "pango": "JN.1.1.3", "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5318,7 +5362,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5329,7 +5373,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5340,7 +5384,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5351,7 +5395,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5362,7 +5406,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5373,7 +5417,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5384,7 +5428,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5395,7 +5439,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5406,7 +5450,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5417,7 +5461,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5428,7 +5472,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5439,7 +5483,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5450,7 +5494,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5461,7 +5505,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5472,7 +5516,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5483,7 +5527,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5494,7 +5538,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5505,7 +5549,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5516,7 +5560,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5527,7 +5571,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5538,7 +5582,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5549,7 +5593,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5560,7 +5604,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5571,7 +5615,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5582,7 +5626,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5708,9 +5752,9 @@ "reason": "COMPLETED" } ], - "B.1.1.529.2.86.1.1.33": [ + "B.1.1.529.2.86.1.1.39.3": [ { - "pango": "JN.1.33", + "pango": "JN.1.39.3", "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 435, "issue": 1395, @@ -5912,7 +5956,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 455, "issue": 1459, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFlirt", + "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6258,28 +6302,6 @@ "reason": "COMPLETED" } ], - "B.1.1.529.2.86.1.1.16.1.2": [ - { - "pango": "LF.2", - "repo": "sars-cov-2-variants/lineage-proposals", - "milestone": 485, - "issue": 1502, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", - "state": "CLOSED", - "reason": "COMPLETED" - } - ], - "B.1.1.529.2.86.1.1.11.1.1.1.3": [ - { - "pango": "KP.1.1.3", - "repo": "sars-cov-2-variants/lineage-proposals", - "milestone": 485, - "issue": 1502, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", - "state": "CLOSED", - "reason": "COMPLETED" - } - ], "B.1.1.529.2.86.1.1.23.1": [ { "pango": "JN.1.23.1", @@ -6319,7 +6341,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 489, "issue": 1557, - "labels": "designated, 2nuc mutation, s:1143, DeFlirt, LB.1", + "labels": "designated, 2nuc mutation, s:1143, DeFLiRT, LB.1", "state": "CLOSED", "reason": "COMPLETED" } @@ -6335,6 +6357,17 @@ "reason": "COMPLETED" } ], + "B.1.1.529.2.86.1.1.16.1.3.1.1": [ + { + "pango": "LF.3.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 490, + "issue": 1558, + "labels": "designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], "B.1.1.529.2.86.1.1.11.1.3.1.2": [ { "pango": "KP.3.1.2", @@ -6363,9 +6396,20 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 493, "issue": 1576, - "labels": "Multiple lineages, designated, S:31, KP.3", + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", "state": "OPEN", - "reason": null + "reason": "REOPENED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.4.1": [ + { + "pango": "KP.3.4.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 493, + "issue": 1576, + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", + "state": "OPEN", + "reason": "REOPENED" } ], "B.1.1.529.2.86.1.1.11.1.1.1.4": [ @@ -6385,7 +6429,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 495, "issue": 1591, - "labels": "designated, S:1229, DeFlirt", + "labels": "designated, S:1229, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6418,7 +6462,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED" } @@ -6429,7 +6473,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED" } @@ -6521,5 +6565,291 @@ "state": "CLOSED", "reason": "COMPLETED" } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.1.1": [ + { + "pango": "MC.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 507, + "issue": 1638, + "labels": "designated, S:572, S:31, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.1": [ + { + "pango": "KP.3.3.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 508, + "issue": 1651, + "labels": "Rapid review needed, High local prevalence, designated, KP.3, S:547", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.3.1": [ + { + "pango": "LB.1.3.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 509, + "issue": 1620, + "labels": "S:445, DeFLiRT, LB.1", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.2.3.4": [ + { + "pango": "KP.2.3.4", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 510, + "issue": 1596, + "labels": "Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.18.3.1": [ + { + "pango": "MA.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 511, + "issue": 1635, + "labels": "To be proposed, designated, S:190, N Glycan, DeFViRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.49.1.1.1": [ + { + "pango": "MB.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 512, + "issue": 1659, + "labels": "designated, s:182, S:31, S:22, FViRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.3.1.1": [ + { + "pango": "LP.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 513, + "issue": 1633, + "labels": "S.1229, S:255, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.16.1.4.1": [ + { + "pango": "LF.4.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 514, + "issue": 1590, + "labels": "To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.15.1.2": [ + { + "pango": "LU.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 515, + "issue": 1652, + "labels": "High local prevalence, designated, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.2.3.3": [ + { + "pango": "KP.2.3.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 516, + "issue": 1618, + "labels": "To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.7.5.2.1": [ + { + "pango": "LK.2.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 517, + "issue": 1679, + "labels": "S:346, S:455, S:572, 2nuc mutation, S:1150, S:547", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.50.2.1": [ + { + "pango": "ME.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 518, + "issue": 1657, + "labels": "S:346, JN.1.50", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.16.1.5": [ + { + "pango": "LF.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 519, + "issue": 1627, + "labels": "designated, S:185, FLiRT, S:33", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.13.1.1.3": [ + { + "pango": "KS.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 520, + "issue": 1535, + "labels": "High local prevalence, Small clusters ??, designated, FLiRT, S:642", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.1.1": [ + { + "pango": "MG.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 521, + "issue": 1623, + "labels": "designated, s:182, S:679, S:572, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.2": [ + { + "pango": "KP.3.3.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 522, + "issue": 1673, + "labels": "Apparently slow, designated, ORF9b, S:435, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.1": [ + { + "pango": "MK.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 523, + "issue": 1605, + "labels": "To be proposed, S:31, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.2": [ + { + "pango": "MK.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 524, + "issue": 1606, + "labels": "To be proposed, Emerged in an undersampled area, Mutations outside spike, designated, KP.3, S:745", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.3.1": [ + { + "pango": "ML.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 525, + "issue": 1683, + "labels": "To be proposed, High local prevalence, designated, S:681, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.2": [ + { + "pango": "MM.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 526, + "issue": 1716, + "labels": "S:185, S:35, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.1": [ + { + "pango": "MM.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 527, + "issue": 1624, + "labels": "designated, S:680, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.5": [ + { + "pango": "KP.3.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 529, + "issue": 1630, + "labels": "designated, s:213, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.7.1": [ + { + "pango": "LB.1.7.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 530, + "issue": 1641, + "labels": "Rapid review needed, designated, S:183, S:148, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.7.3": [ + { + "pango": "LB.1.7.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 531, + "issue": 1555, + "labels": "Apparently slow, designated, NSP3, DeFLiRT, LB.1, S:34", + "state": "CLOSED", + "reason": "NOT_PLANNED" + } + ], + "B.1.1.529.2.86.1.1.63": [ + { + "pango": "JN.1.63", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED" + } + ], + "B.1.1.529.2.86.1.1.63.1": [ + { + "pango": "JN.1.63.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED" + } ] }