Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

KP.1.1+Orf1b:L2213F+S:N185del, F186I(289 seqs, 31 countries) #2649

Open
aviczhl2 opened this issue Jun 9, 2024 · 10 comments
Open

KP.1.1+Orf1b:L2213F+S:N185del, F186I(289 seqs, 31 countries) #2649

aviczhl2 opened this issue Jun 9, 2024 · 10 comments

Comments

@aviczhl2
Copy link
Contributor

aviczhl2 commented Jun 9, 2024 •
edited
Loading

From sars-cov-2-variants/lineage-proposals#1509

Other than KP.1.1.1(S:K182N), other seqs on the Orf1b:L2213F branch of KP.1.1 have another NTD mutation set that usher doesn't display.

KP.1.1+C20104T(Orf1b:L2213F)+del22115_22117,T22118A(S:N185-, F186I)

GISAID query: T22926C,C7113T,T22118A
No. of seqs: 117(Australia 1 Canada 10 Denmark 2 UK 35 France 14 Germany 1 India 2 Ireland 1 Japan 12 Nepal 2 South Korea 1 Singapore 7 Spain 5 Thailand 1 USA 20(2 from Qatar, 2 from France, 1 from India, 1 from South Africa, 2 from UK))

usher

Usher doesn't display this deletion+mutation and simply put it next to KP.1.1.1. Most seqs on KP.1.1+Orf1b:L2213F branch that is not KP.1.1.1 are in this branch.

image
@FedeGueli
Copy link
Contributor

136 now with 3 samples collected in June , 2 in Hubei. ping @corneliusroemer

@aviczhl2
Copy link
Contributor Author

167, Netherlands, China, Portugal, Malaysia, New Zealand

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(117 seqs, 17 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(167 seqs, 22 countries) Jun 22, 2024
@aviczhl2
Copy link
Contributor Author

aviczhl2 commented Jul 1, 2024

186, Iceland

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(167 seqs, 22 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(186 seqs, 23 countries) Jul 1, 2024
@aviczhl2
Copy link
Contributor Author

aviczhl2 commented Jul 8, 2024

213, Norway, Italy, Mexico

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(186 seqs, 23 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(213 seqs, 26 countries) Jul 8, 2024
@FedeGueli
Copy link
Contributor

231 ping @corneliusroemer worth a designation this one

@aviczhl2
Copy link
Contributor Author

240, Belgium,

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(213 seqs, 26 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(240 seqs, 27 countries) Jul 18, 2024
@aviczhl2
Copy link
Contributor Author

253, Sweden

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(240 seqs, 27 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(253 seqs, 28 countries) Jul 23, 2024
@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(253 seqs, 28 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(259 seqs, 28 countries) Jul 29, 2024
@aviczhl2
Copy link
Contributor Author

aviczhl2 commented Aug 3, 2024

276, Luxembourg

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(259 seqs, 28 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(276 seqs, 29 countries) Aug 3, 2024
@aviczhl2
Copy link
Contributor Author

aviczhl2 commented Aug 8, 2024

284, UAE

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(276 seqs, 29 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(284 seqs, 30 countries) Aug 8, 2024
@aviczhl2
Copy link
Contributor Author

289, Israel

@aviczhl2 aviczhl2 changed the title KP.1.1+Orf1b:L2213F+S:N185del, F186I(284 seqs, 30 countries) KP.1.1+Orf1b:L2213F+S:N185del, F186I(289 seqs, 31 countries) Aug 12, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@aviczhl2 @FedeGueli