diff --git a/Makefile b/Makefile
index 266375d2..5a92adf1 100644
--- a/Makefile
+++ b/Makefile
@@ -70,14 +70,6 @@ cobertura:
 		grep -v zz_generated.deepcopy | \
 		$(GOCOVER_COBERTURA) > $(GO_TEST_OUTPUT)/cobertura-coverage.xml
 
-crds.clean:
-	@$(INFO) cleaning generated CRDs
-	@find package/crds -name *.yaml -exec sed -i.sed -e '1,2d' {} \; || $(FAIL)
-	@find package/crds -name *.yaml.sed -delete || $(FAIL)
-	@$(OK) cleaned generated CRDs
-
-generate.done: crds.clean
-
 # integration tests
 e2e.run: test-integration
 
@@ -105,4 +97,4 @@ run: $(KUBECTL) generate
 manifests:
 	@$(INFO) Deprecated. Run make generate instead.
 
-.PHONY: cobertura submodules fallthrough test-integration run manifests crds.clean
+.PHONY: cobertura submodules fallthrough test-integration run manifests
diff --git a/package/crds/kubernetes.crossplane.io_objects.yaml b/package/crds/kubernetes.crossplane.io_objects.yaml
index cab5b527..842a9b4a 100644
--- a/package/crds/kubernetes.crossplane.io_objects.yaml
+++ b/package/crds/kubernetes.crossplane.io_objects.yaml
@@ -1,3 +1,5 @@
+---
+apiVersion: apiextensions.k8s.io/v1
 kind: CustomResourceDefinition
 metadata:
   annotations:
diff --git a/package/crds/kubernetes.crossplane.io_providerconfigs.yaml b/package/crds/kubernetes.crossplane.io_providerconfigs.yaml
index 94ccce94..6675e51b 100644
--- a/package/crds/kubernetes.crossplane.io_providerconfigs.yaml
+++ b/package/crds/kubernetes.crossplane.io_providerconfigs.yaml
@@ -1,3 +1,5 @@
+---
+apiVersion: apiextensions.k8s.io/v1
 kind: CustomResourceDefinition
 metadata:
   annotations:
diff --git a/package/crds/kubernetes.crossplane.io_providerconfigusages.yaml b/package/crds/kubernetes.crossplane.io_providerconfigusages.yaml
index f7035569..6b488dcb 100644
--- a/package/crds/kubernetes.crossplane.io_providerconfigusages.yaml
+++ b/package/crds/kubernetes.crossplane.io_providerconfigusages.yaml
@@ -1,3 +1,5 @@
+---
+apiVersion: apiextensions.k8s.io/v1
 kind: CustomResourceDefinition
 metadata:
   annotations: